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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039622 through 18771 annotations produced 1 hits



eIF4E-6 (eIF4E-6):

Annotation Number : CG1442
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039622
Gbrowse : chr3R:24852160-24852896 (-) // 100.0 //
Probeset : 1633137_at
Accessions : protein= NP_651654;, nucleotide= NM_143397;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0016281 // eukaryotic translation initiation factor 4F c
Interpro : 0000339 // RNA cap binding // inferred from sequence or structural similarity /// 0003723 // RNA binding // inferred fro
FlyMine data for FBgn0039622.
VDRC has 2 RNAi stocks for FBgn0039622 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 ± 24 of 4 2.80Up
Head15 ± 12 of 4 1.70None
Eye13 ± 14 of 4 1.55None
Thoracicoabdominal ganglion32 ± 04 of 4 3.70Up
Salivary gland12 ± 40 of 4 1.50None
Crop56 ± 54 of 4 6.60Up
Midgut23 ± 00 of 4 2.70Up
Tubule5 ± 00 of 4 0.60Down
Hindgut17 ± 11 of 4 2.10Up
Heart0 ± 00 of 4 0.09Down
Fat body2 ± 10 of 4 0.28Down
Ovary2 ± 10 of 4 0.30None
Testis38 ± 24 of 4 4.50Up
Male accessory glands19 ± 61 of 4 2.30None
Virgin spermatheca1 ± 00 of 4 0.17Down
Mated spermatheca3 ± 10 of 4 0.40None
Adult carcass4 ± 10 of 4 0.50None
Larval CNS7 ± 21 of 4 0.85None
Larval Salivary gland10 ± 20 of 4 1.18None
Larval midgut12 ± 10 of 4 1.51None
Larval tubule4 ± 20 of 4 0.50None
Larval hindgut3 ± 10 of 4 0.42None
Larval fat body14 ± 41 of 4 1.70None
Larval trachea13 ± 30 of 4 1.57None
Larval carcass5 ± 10 of 4 0.63None
S2 cells (growing)31 ± 14 of 4 3.64Up
Whole fly8 ± 20 of 4

Looking for FBgn0039622. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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