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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039626 through 18771 annotations produced 1 hits



CG1420 (Slu7):

Annotation Number : CG1420
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039626
Gbrowse : chr3R:24862775-24864788 (-) // 99.73 //
Probeset : 1624639_at
Accessions : protein= NP_651659;, nucleotide= NM_143402;
Pathway : via spliceosome // inferred from sequence or structural similarity /// 0006397 // mRNA processing // inferred from elec
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005681 // spliceosomal complex // inferred from sequence
FlyMine data for FBgn0039626.
BDGP gene expression has embryonic in situ data for CG1420: 4 pix of staining in 1 body parts.
BioGrid reports that CG1420 interacts with CG3294 .
VDRC has 2 RNAi stocks for FBgn0039626 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain84 14 of 4 1.20Up
Head53 44 of 4 0.80None
Eye48 34 of 4 0.72Down
Thoracicoabdominal ganglion60 24 of 4 0.90None
Salivary gland62 43 of 4 0.92None
Crop76 34 of 4 1.10None
Midgut46 24 of 4 0.70Down
Tubule75 44 of 4 1.10None
Hindgut59 34 of 4 0.90None
Heart35 24 of 4 0.52Down
Fat body44 52 of 4 0.66Down
Ovary111 44 of 4 1.60Up
Testis48 34 of 4 0.70Down
Male accessory glands63 34 of 4 0.90None
Virgin spermatheca66 54 of 4 0.98None
Mated spermatheca64 44 of 4 0.96None
Adult carcass37 42 of 4 0.60Down
Larval CNS111 64 of 4 1.65Up
Larval Salivary gland74 34 of 4 1.09None
Larval midgut36 52 of 4 0.54Down
Larval tubule55 14 of 4 0.80None
Larval hindgut56 14 of 4 0.83None
Larval fat body52 24 of 4 0.80None
Larval trachea53 24 of 4 0.78None
Larval carcass43 14 of 4 0.64Down
S2 cells (growing)96 24 of 4 1.42Up
Whole fly67 54 of 4

Looking for FBgn0039626. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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