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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039635 through 18771 annotations produced 2 hits



Pyruvate dehydrogenase E1beta subunit (CG11876):

Annotation Number : CG11876
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039635
Gbrowse : chr3R:24938792-24941918 (+) // 100.0 //
Probeset : 1639252_s_at
Accessions : protein= NP_651668; /// NP_733265; /// NP_733266; /// NP_733267;, nucleotide= NM_143411; /// NM_170386; /// NM_170387; /// NM_170388;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from d
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004739 // pyruvate dehydrogenase (acetyl-trans
FlyMine data for FBgn0039635.
BDGP gene expression has embryonic in situ data for CG11876: 18 pix of staining in 17 body parts.
Homophila reports that CG11876 is a close match (1e-42) to human gene BCKDHB;E1B (NP_898871), a gene associated with Maple syrup urine disease, type Ib, 248600 (3).
BioGrid reports that CG11876 interacts with CG13280 CG17383 CG2677 CG6315 CG7010 CG7228 CG11876 CG11881 CG1635 CG4761 CG5692 CG6143 CG7641 CG8057 CG9373 CG3485 .
VDRC has 1 RNAi stocks for FBgn0039635 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain718 ± 104 of 4 1.00None
Head899 ± 554 of 4 1.20None
Eye1351 ± 394 of 4 1.82Up
Thoracicoabdominal ganglion816 ± 74 of 4 1.10None
Salivary gland1016 ± 164 of 4 1.37Up
Crop533 ± 244 of 4 0.70Down
Midgut524 ± 154 of 4 0.70Down
Tubule1443 ± 434 of 4 1.90Up
Hindgut1063 ± 224 of 4 1.40Up
Heart1084 ± 294 of 4 1.46Up
Fat body1199 ± 934 of 4 1.62Up
Ovary349 ± 84 of 4 0.50Down
Testis1196 ± 304 of 4 1.60Up
Male accessory glands335 ± 84 of 4 0.50Down
Virgin spermatheca945 ± 384 of 4 1.28Up
Mated spermatheca788 ± 334 of 4 1.06None
Adult carcass1783 ± 684 of 4 2.40Up
Larval CNS373 ± 264 of 4 0.50Down
Larval Salivary gland653 ± 54 of 4 0.88None
Larval midgut528 ± 294 of 4 0.71Down
Larval tubule606 ± 544 of 4 0.80None
Larval hindgut864 ± 304 of 4 1.17Up
Larval fat body442 ± 194 of 4 0.60Down
Larval trachea374 ± 234 of 4 0.51Down
Larval carcass878 ± 944 of 4 1.18None
S2 cells (growing)422 ± 84 of 4 0.57Down
Whole fly741 ± 284 of 4



Pyruvate dehydrogenase E1beta subunit (CG11876):

Annotation Number : CG11876
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039635
Gbrowse : chr3R:24938792-24940618 (+) // 100.0 //
Probeset : 1636677_s_at
Accessions : protein= NP_651668; /// NP_733265; /// NP_733266; /// NP_733267;, nucleotide= NM_143411; /// NM_170386; /// NM_170387; /// NM_170388;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from d
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004739 // pyruvate dehydrogenase (acetyl-trans
FlyMine data for FBgn0039635.
BDGP gene expression has embryonic in situ data for CG11876: 18 pix of staining in 17 body parts.
Homophila reports that CG11876 is a close match (1e-42) to human gene BCKDHB;E1B (NP_898871), a gene associated with Maple syrup urine disease, type Ib, 248600 (3).
BioGrid reports that CG11876 interacts with CG13280 CG17383 CG2677 CG6315 CG7010 CG7228 CG11876 CG11881 CG1635 CG4761 CG5692 CG6143 CG7641 CG8057 CG9373 CG3485 .
VDRC has 1 RNAi stocks for FBgn0039635 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain253 ± 44 of 4 1.50Up
Head189 ± 64 of 4 1.10None
Eye138 ± 14 of 4 0.80Down
Thoracicoabdominal ganglion247 ± 144 of 4 1.40Up
Salivary gland236 ± 164 of 4 1.37Up
Crop173 ± 34 of 4 1.00None
Midgut209 ± 84 of 4 1.20Up
Tubule219 ± 104 of 4 1.30Up
Hindgut319 ± 74 of 4 1.80Up
Heart228 ± 74 of 4 1.32Up
Fat body170 ± 84 of 4 0.99None
Ovary173 ± 54 of 4 1.00None
Testis78 ± 14 of 4 0.50Down
Male accessory glands70 ± 44 of 4 0.40Down
Virgin spermatheca128 ± 44 of 4 0.75Down
Mated spermatheca133 ± 34 of 4 0.77Down
Adult carcass201 ± 74 of 4 1.20Up
Larval CNS181 ± 144 of 4 1.05None
Larval Salivary gland142 ± 44 of 4 0.82Down
Larval midgut180 ± 204 of 4 1.04None
Larval tubule89 ± 24 of 4 0.50Down
Larval hindgut228 ± 154 of 4 1.33Up
Larval fat body82 ± 94 of 4 0.50Down
Larval trachea155 ± 104 of 4 0.90None
Larval carcass198 ± 184 of 4 1.15None
S2 cells (growing)168 ± 14 of 4 0.97None
Whole fly172 ± 74 of 4

Looking for FBgn0039635. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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