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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039636 through 18771 annotations produced 1 hits



(CG11877):

Annotation Number : CG11877
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039636
Gbrowse : chr3R:24942109-24944112 (+) // 100.0 //
Probeset : 1631515_at
Accessions : protein= NP_651669;, nucleotide= NM_143412;
FlyMine data for FBgn0039636.
BDGP gene expression has embryonic in situ data for CG11877: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0039636 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039636 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain176 ± 24 of 4 1.30Up
Head163 ± 54 of 4 1.20Up
Eye147 ± 74 of 4 1.08None
Thoracicoabdominal ganglion201 ± 64 of 4 1.50Up
Salivary gland109 ± 14 of 4 0.80Down
Crop184 ± 54 of 4 1.30Up
Midgut162 ± 74 of 4 1.20Up
Tubule66 ± 14 of 4 0.50Down
Hindgut121 ± 34 of 4 0.90Down
Heart149 ± 34 of 4 1.10Up
Fat body244 ± 294 of 4 1.79Up
Ovary195 ± 34 of 4 1.40Up
Testis156 ± 34 of 4 1.10Up
Male accessory glands76 ± 34 of 4 0.60Down
Virgin spermatheca272 ± 144 of 4 2.00Up
Mated spermatheca184 ± 144 of 4 1.35Up
Adult carcass198 ± 104 of 4 1.50Up
Larval CNS190 ± 74 of 4 1.39Up
Larval Salivary gland87 ± 64 of 4 0.64Down
Larval midgut132 ± 44 of 4 0.97None
Larval tubule104 ± 44 of 4 0.80Down
Larval hindgut104 ± 44 of 4 0.77Down
Larval fat body138 ± 44 of 4 1.00None
Larval trachea113 ± 104 of 4 0.83Down
Larval carcass131 ± 44 of 4 0.96None
S2 cells (growing)314 ± 34 of 4 2.30Up
Whole fly136 ± 34 of 4

Looking for FBgn0039636. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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