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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039645 through 18771 annotations produced 1 hits



(CG11898):

Annotation Number : CG11898
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039645
Gbrowse : chr3R:24991514-24996871 (+) // 100.0 //
Probeset : 1628954_at
Accessions : protein= NP_651679;, nucleotide= NM_143422;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electr
FlyMine data for FBgn0039645.
Homophila reports that CG11898 is a close match (2e-13) to human gene ABCD3;PMP70;PXMP1 (NP_002849), a gene associated with Zellweger syndrome-2 (3).
VDRC has 3 RNAi stocks for FBgn0039645 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.60None
Head8 ± 30 of 4 1.50None
Eye4 ± 10 of 4 0.75None
Thoracicoabdominal ganglion2 ± 10 of 4 0.40None
Salivary gland6 ± 30 of 4 1.13None
Crop9 ± 30 of 4 1.70None
Midgut35 ± 34 of 4 6.20Up
Tubule9 ± 10 of 4 1.70Up
Hindgut4 ± 20 of 4 0.80None
Heart2 ± 10 of 4 0.46None
Fat body15 ± 90 of 4 2.66None
Ovary2 ± 00 of 4 0.50None
Testis2 ± 00 of 4 0.40None
Male accessory glands9 ± 30 of 4 1.70None
Virgin spermatheca11 ± 20 of 4 1.94None
Mated spermatheca12 ± 20 of 4 2.11None
Adult carcass4 ± 20 of 4 0.90None
Larval CNS4 ± 10 of 4 0.77None
Larval Salivary gland12 ± 50 of 4 2.09None
Larval midgut49 ± 74 of 4 8.60Up
Larval tubule6 ± 00 of 4 1.20None
Larval hindgut9 ± 00 of 4 1.69None
Larval fat body8 ± 10 of 4 1.40None
Larval trachea10 ± 53 of 4 1.78None
Larval carcass7 ± 20 of 4 1.35None
S2 cells (growing)2 ± 10 of 4 0.50None
Whole fly5 ± 20 of 4

Looking for FBgn0039645. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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