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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039656 through 18771 annotations produced 1 hits



(CG11951):

Annotation Number : CG11951
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039656
Gbrowse : chr3R:25061085-25063870 (-) // 100.0 //
Probeset : 1639907_at
Accessions : protein= NP_651688;, nucleotide= NM_143431;
Interpro : 0004177 // aminopeptidase activity // inferred from sequence or structural similarity /// 0004177 // aminopeptidase acti
FlyMine data for FBgn0039656.
VDRC has 4 RNAi stocks for FBgn0039656 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head82 ± 104 of 4 6.20Up
Eye22 ± 24 of 4 1.70Up
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland7 ± 30 of 4 0.54None
Crop281 ± 244 of 421.30Up
Midgut0 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut4 ± 10 of 4 0.40Down
Heart10 ± 13 of 4 0.80None
Fat body10 ± 31 of 4 0.79None
Ovary0 ± 00 of 4 0.10Down
Testis6 ± 11 of 4 0.50None
Male accessory glands6 ± 20 of 4 0.50None
Virgin spermatheca18 ± 12 of 4 1.43None
Mated spermatheca17 ± 32 of 4 1.35None
Adult carcass84 ± 24 of 4 6.40Up
Larval CNS0 ± 00 of 4 0.03Down
Larval Salivary gland2 ± 00 of 4 0.15Down
Larval midgut0 ± 00 of 4 0.05Down
Larval tubule0 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.14Down
Larval fat body43 ± 04 of 4 3.30Up
Larval trachea3 ± 20 of 4 0.23Down
Larval carcass3 ± 10 of 4 0.28Down
S2 cells (growing)0 ± 00 of 4 0.06Down
Whole fly13 ± 24 of 4

Looking for FBgn0039656. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime