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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039664 through 18771 annotations produced 1 hits



(CG2006):

Annotation Number : CG2006
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039664
Gbrowse : chr3R:25315215-25317105 (+) // 100.0 //
Probeset : 1633315_at
Accessions : protein= NP_651693;, nucleotide= NM_143436;
FlyMine data for FBgn0039664.
VDRC has 1 RNAi stocks for FBgn0039664 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 ± 24 of 4 1.00None
Head18 ± 24 of 4 1.20None
Eye11 ± 23 of 4 0.76None
Thoracicoabdominal ganglion21 ± 04 of 4 1.50Up
Salivary gland114 ± 144 of 4 7.65Up
Crop23 ± 44 of 4 1.50None
Midgut22 ± 04 of 4 1.50Up
Tubule15 ± 03 of 4 1.00None
Hindgut17 ± 04 of 4 1.20None
Heart16 ± 04 of 4 1.11None
Fat body17 ± 42 of 4 1.15None
Ovary21 ± 24 of 4 1.40None
Testis20 ± 14 of 4 1.40None
Male accessory glands69 ± 14 of 4 4.60Up
Virgin spermatheca127 ± 114 of 4 8.53Up
Mated spermatheca106 ± 134 of 4 7.15Up
Adult carcass20 ± 13 of 4 1.40None
Larval CNS16 ± 44 of 4 1.12None
Larval Salivary gland93 ± 44 of 4 6.23Up
Larval midgut14 ± 14 of 4 0.94None
Larval tubule25 ± 24 of 4 1.70Up
Larval hindgut15 ± 14 of 4 1.00None
Larval fat body35 ± 74 of 4 2.40None
Larval trachea15 ± 24 of 4 1.06None
Larval carcass23 ± 34 of 4 1.60None
S2 cells (growing)27 ± 14 of 4 1.86Up
Whole fly15 ± 24 of 4

Looking for FBgn0039664. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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