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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039665 through 18771 annotations produced 1 hits


Annotation Number : CG2310
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039665
Gbrowse : chr3R:25317245-25319235 (-) // 100.0 //
Probeset : 1632556_s_at
Accessions : protein= NP_651694; /// NP_733290;, nucleotide= NM_143437; /// NM_170411;
FlyMine data for FBgn0039665.
BDGP gene expression has embryonic in situ data for CG2310: 30 pix of staining in 11 body parts.
VDRC has 3 RNAi stocks for FBgn0039665 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 14 of 4 0.30Down
Head65 54 of 4 0.70Down
Eye71 54 of 4 0.75Down
Thoracicoabdominal ganglion40 33 of 4 0.40Down
Salivary gland125 43 of 4 1.31Up
Crop79 34 of 4 0.80None
Midgut149 154 of 4 1.60Up
Tubule41 10 of 4 0.40Down
Hindgut82 14 of 4 0.90None
Heart52 44 of 4 0.55Down
Fat body62 51 of 4 0.65Down
Ovary185 34 of 4 1.90Up
Testis44 34 of 4 0.50Down
Male accessory glands75 34 of 4 0.80Down
Virgin spermatheca44 40 of 4 0.47Down
Mated spermatheca61 51 of 4 0.65Down
Adult carcass70 71 of 4 0.70Down
Larval CNS99 54 of 4 1.04None
Larval Salivary gland110 64 of 4 1.15None
Larval midgut155 54 of 4 1.62Up
Larval tubule45 41 of 4 0.50Down
Larval hindgut93 74 of 4 0.98None
Larval fat body58 50 of 4 0.60Down
Larval trachea213 124 of 4 2.22Up
Larval carcass105 144 of 4 1.10None
S2 cells (growing)700 264 of 4 7.30Up
Whole fly96 64 of 4

Looking for FBgn0039665. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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