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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039666 through 18771 annotations produced 1 hits



(CG11501):

Annotation Number : CG11501
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039666
Gbrowse : chr3R:25319573-25319987 (+) // 100.0 //
Probeset : 1638812_at
Accessions : protein= NP_651695;, nucleotide= NM_143438;
FlyMine data for FBgn0039666.
BDGP gene expression has embryonic in situ data for CG11501: 4 pix of staining in 1 body parts.
BioGrid reports that CG11501 interacts with CG17358 .
VDRC has 1 RNAi stocks for FBgn0039666 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 10 of 4 0.20None
Head305 ± 1354 of 4 7.80None
Eye106 ± 354 of 4 2.73None
Thoracicoabdominal ganglion13 ± 00 of 4 0.30None
Salivary gland18 ± 30 of 4 0.47None
Crop7 ± 20 of 4 0.20None
Midgut5 ± 10 of 4 0.10None
Tubule8 ± 30 of 4 0.20Down
Hindgut3 ± 10 of 4 0.10None
Heart34 ± 74 of 4 0.88None
Fat body183 ± 1264 of 4 4.73None
Ovary4 ± 00 of 4 0.10None
Testis13 ± 10 of 4 0.30None
Male accessory glands16 ± 10 of 4 0.40None
Virgin spermatheca582 ± 2874 of 414.97None
Mated spermatheca472 ± 3634 of 412.16None
Adult carcass104 ± 214 of 4 2.70None
Larval CNS8 ± 10 of 4 0.23None
Larval Salivary gland9 ± 30 of 4 0.24None
Larval midgut11 ± 20 of 4 0.28None
Larval tubule2 ± 00 of 4 0.10None
Larval hindgut6 ± 11 of 4 0.17None
Larval fat body6 ± 30 of 4 0.20None
Larval trachea2 ± 10 of 4 0.06None
Larval carcass10 ± 20 of 4 0.28None
S2 cells (growing)5 ± 10 of 4 0.15None
Whole fly38 ± 173 of 4

Looking for FBgn0039666. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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