FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039669 through 18771 annotations produced 1 hits

NADH:ubiquinone oxidoreductase 20 kDa subunit (CG2014):

Annotation Number : CG2014
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039669
Gbrowse : chr3R:25341566-25342205 (+) // 100.0 //
Probeset : 1633748_at
Accessions : protein= NP_651698;, nucleotide= NM_143441;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0019684 // photosynthesis
Interpro : light reaction // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from electronic an
FlyMine data for FBgn0039669.
Homophila reports that CG2014 is a close match (5e-67) to human gene NDUFS7;PSST (NP_077718), a gene associated with Leigh syndrome, 256000 (3).
VDRC has 4 RNAi stocks for FBgn0039669 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 0	0 of 4	0.10	Down
Head	6 ± 3	0 of 4	0.20	Down
Eye	2 ± 0	0 of 4	0.06	Down
Thoracicoabdominal ganglion	8 ± 3	0 of 4	0.30	Down
Salivary gland	11 ± 5	0 of 4	0.32	Down
Crop	3 ± 0	0 of 4	0.10	Down
Midgut	1 ± 0	0 of 4	0.10	Down
Tubule	4 ± 0	0 of 4	0.10	Down
Hindgut	3 ± 1	0 of 4	0.10	Down
Heart	1 ± 0	0 of 4	0.03	Down
Fat body	6 ± 4	0 of 4	0.20	Down
Ovary	2 ± 0	0 of 4	0.10	Down
Testis	474 ± 6	4 of 4	13.90	Up
Male accessory glands	7 ± 2	0 of 4	0.20	Down
Virgin spermatheca	4 ± 1	0 of 4	0.12	Down
Mated spermatheca	1 ± 0	0 of 4	0.04	Down
Adult carcass	10 ± 4	0 of 4	0.30	Down
Larval CNS	1 ± 2	0 of 4	0.05	Down
Larval Salivary gland	2 ± 0	0 of 4	0.08	Down
Larval midgut	6 ± 1	0 of 4	0.18	Down
Larval tubule	2 ± 1	0 of 4	0.10	Down
Larval hindgut	4 ± 1	0 of 4	0.13	Down
Larval fat body	60 ± 25	1 of 4	1.80	None
Larval trachea	4 ± 3	0 of 4	0.13	Down
Larval carcass	4 ± 2	0 of 4	0.14	Down
S2 cells (growing)	1 ± 0	0 of 4	0.03	Down
Whole fly	34 ± 1	4 of 4

Looking for FBgn0039669. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720