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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039670 through 18771 annotations produced 1 hits


(CG7567):

Annotation Number : CG7567
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039670
Gbrowse : chr3R:25412957-25413822 (-) // 100.0 //
Probeset : 1631369_at
Accessions : protein= NP_651699;, nucleotide= NM_143442;
FlyMine data for FBgn0039670.
BDGP gene expression has embryonic in situ data for CG7567: 24 pix of staining in 6 body parts.
VDRC has 2 RNAi stocks for FBgn0039670 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head30 ± 142 of 4 0.50None
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland9 ± 40 of 4 0.16Down
Crop35 ± 172 of 4 0.60None
Midgut993 ± 1054 of 417.20Up
Tubule4 ± 00 of 4 0.10Down
Hindgut11 ± 00 of 4 0.20Down
Heart13 ± 20 of 4 0.24Down
Fat body38 ± 140 of 4 0.67None
Ovary2 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands3 ± 00 of 4 0.10Down
Virgin spermatheca19 ± 30 of 4 0.34Down
Mated spermatheca14 ± 40 of 4 0.25Down
Adult carcass5 ± 10 of 4 0.10Down
Larval CNS3 ± 20 of 4 0.05Down
Larval Salivary gland4 ± 10 of 4 0.08Down
Larval midgut5026 ± 1674 of 487.23Up
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut8 ± 30 of 4 0.15Down
Larval fat body51 ± 100 of 4 0.90None
Larval trachea1 ± 00 of 4 0.02Down
Larval carcass1 ± 00 of 4 0.03Down
S2 cells (growing)2 ± 00 of 4 0.04Down
Whole fly57 ± 72 of 4

Looking for FBgn0039670. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime