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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039671 through 18771 annotations produced 1 hits



(CG11470):

Annotation Number : CG11470
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039671
Gbrowse : chr3R:25414714-25415484 (-) // 100.0 //
Probeset : 1635791_at
Accessions : protein= NP_651700;, nucleotide= NM_143443;
FlyMine data for FBgn0039671.
VDRC has 2 RNAi stocks for FBgn0039671 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.30None
Head3 ± 10 of 4 0.70None
Eye1 ± 00 of 4 0.23Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.90None
Salivary gland10 ± 20 of 4 1.96None
Crop6 ± 10 of 4 1.30None
Midgut34 ± 44 of 4 6.60Up
Tubule4 ± 00 of 4 0.80None
Hindgut2 ± 00 of 4 0.50Down
Heart1 ± 00 of 4 0.20Down
Fat body13 ± 60 of 4 2.59None
Ovary1 ± 00 of 4 0.30Down
Testis5 ± 10 of 4 1.10None
Male accessory glands2 ± 10 of 4 0.50None
Virgin spermatheca8 ± 10 of 4 1.62None
Mated spermatheca7 ± 20 of 4 1.33None
Adult carcass6 ± 20 of 4 1.20None
Larval CNS9 ± 43 of 4 1.80None
Larval Salivary gland4 ± 10 of 4 0.81None
Larval midgut3952 ± 1324 of 4752.91Up
Larval tubule7 ± 30 of 4 1.50None
Larval hindgut6 ± 11 of 4 1.30None
Larval fat body17 ± 52 of 4 3.20None
Larval trachea1 ± 10 of 4 0.34Down
Larval carcass3 ± 00 of 4 0.68None
S2 cells (growing)1 ± 00 of 4 0.27Down
Whole fly5 ± 00 of 4

Looking for FBgn0039671. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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