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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039673 through 18771 annotations produced 1 hits



(CG7568):

Annotation Number : CG7568
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039673
Gbrowse : chr3R:25425018-25426381 (-) // 100.0 //
Probeset : 1627130_at
Accessions : protein= NP_001097972;, nucleotide= NM_001104502;
FlyMine data for FBgn0039673.
Homophila reports that CG7568 is a close match (2e-13) to human gene BRWD3;MRX93 (NP_694984), a gene associated with Mental retardation, X-linked 93, 300659 (3).
VDRC has 2 RNAi stocks for FBgn0039673 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 1.30None
Head3 ± 10 of 4 3.80None
Eye1 ± 10 of 4 2.31None
Thoracicoabdominal ganglion1 ± 00 of 4 1.40None
Salivary gland4 ± 00 of 4 5.66Up
Crop1 ± 00 of 4 2.00None
Midgut2 ± 00 of 4 2.80Up
Tubule1 ± 00 of 4 1.60Up
Hindgut1 ± 00 of 4 1.80None
Heart1 ± 00 of 4 1.44None
Fat body1 ± 00 of 4 1.88Up
Ovary0 ± 00 of 4 0.50Down
Testis0 ± 00 of 4 1.10None
Male accessory glands2 ± 00 of 4 2.50None
Virgin spermatheca2 ± 00 of 4 3.00None
Mated spermatheca2 ± 00 of 4 3.28None
Adult carcass1 ± 00 of 4 2.40None
Larval CNS0 ± 00 of 4 1.03None
Larval Salivary gland1 ± 00 of 4 2.22None
Larval midgut4 ± 00 of 4 5.78Up
Larval tubule1 ± 00 of 4 1.90None
Larval hindgut1 ± 00 of 4 1.22None
Larval fat body2 ± 00 of 4 2.50None
Larval trachea0 ± 00 of 4 1.06None
Larval carcass1 ± 00 of 4 2.28None
S2 cells (growing)2 ± 00 of 4 2.50None
Whole fly0 ± 00 of 4

Looking for FBgn0039673. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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