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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039679 through 18771 annotations produced 1 hits



pickpocket 19 (ppk19):

Annotation Number : CG18287
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039679
Gbrowse : chr3R:25498177-25499645 (+) // 100.0 //
Probeset : 1624548_at
Accessions : protein= NP_651708;, nucleotide= NM_143451;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005216 // ion channel activity // inferred from electronic annotation /// 0005272 // sodium channel activity // inferre
FlyMine data for FBgn0039679.
TRiP has 1 RNAi stocks for FBgn0039679 available for purchase.
VDRC has 2 RNAi stocks for FBgn0039679 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40None
Head1 ± 00 of 4 0.40None
Eye0 ± 00 of 4 0.37None
Thoracicoabdominal ganglion1 ± 00 of 4 0.50None
Salivary gland9 ± 40 of 4 3.63None
Crop2 ± 00 of 4 0.80None
Midgut1 ± 00 of 4 0.40None
Tubule2 ± 00 of 4 0.80Down
Hindgut4 ± 10 of 4 1.70None
Heart3 ± 10 of 4 1.41None
Fat body6 ± 40 of 4 2.32None
Ovary1 ± 00 of 4 0.40None
Testis25 ± 44 of 4 9.60Up
Male accessory glands1 ± 00 of 4 0.60None
Virgin spermatheca3 ± 10 of 4 1.20None
Mated spermatheca3 ± 10 of 4 1.18None
Adult carcass2 ± 00 of 4 1.00None
Larval CNS5 ± 30 of 4 1.94None
Larval Salivary gland4 ± 10 of 4 1.80None
Larval midgut3 ± 10 of 4 1.24None
Larval tubule2 ± 10 of 4 0.90None
Larval hindgut5 ± 10 of 4 2.17None
Larval fat body7 ± 30 of 4 2.80None
Larval trachea2 ± 20 of 4 0.77None
Larval carcass1 ± 00 of 4 0.66None
S2 cells (growing)1 ± 00 of 4 0.46None
Whole fly2 ± 00 of 4

Looking for FBgn0039679. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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