FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039682 through 18771 annotations produced 1 hits

Odorant-binding protein 99c (Obp99c):

Annotation Number : CG7584
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039682
Gbrowse : chr3R:25511455-25512504 (-) // 100.0 //
Probeset : 1625122_at
Accessions : protein= NP_651711;, nucleotide= NM_143454;
Interpro : 0005549 // odorant binding // inferred from electronic annotation /// 0005549 // odorant binding // not recorded
FlyMine data for FBgn0039682.
BDGP gene expression has embryonic in situ data for Obp99c: 9 pix of staining in 3 body parts.
VDRC has 1 RNAi stocks for FBgn0039682 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	201 ± 18	4 of 4	0.20	Down
Head	3251 ± 189	4 of 4	3.40	Up
Eye	2312 ± 331	4 of 4	2.40	Up
Thoracicoabdominal ganglion	212 ± 20	4 of 4	0.20	Down
Salivary gland	18 ± 8	0 of 4	0.02	Down
Crop	155 ± 21	4 of 4	0.20	Down
Midgut	2 ± 0	0 of 4	0.00	Down
Tubule	43 ± 11	2 of 4	0.00	Down
Hindgut	520 ± 16	4 of 4	0.50	Down
Heart	4343 ± 300	4 of 4	4.51	Up
Fat body	5093 ± 668	4 of 4	5.29	Up
Ovary	0 ± 0	0 of 4	0.00	Down
Testis	6 ± 0	0 of 4	0.00	Down
Male accessory glands	3 ± 1	0 of 4	0.00	Down
Virgin spermatheca	2977 ± 444	4 of 4	3.09	Up
Mated spermatheca	2482 ± 90	4 of 4	2.58	Up
Adult carcass	4836 ± 100	4 of 4	5.00	Up
Larval CNS	0 ± 0	0 of 4	0.00	Down
Larval Salivary gland	85 ± 3	4 of 4	0.09	Down
Larval midgut	3 ± 0	0 of 4	0.00	Down
Larval tubule	20 ± 6	2 of 4	0.00	Down
Larval hindgut	61 ± 14	4 of 4	0.06	Down
Larval fat body	7126 ± 828	4 of 4	7.40	Up
Larval trachea	62 ± 50	3 of 4	0.06	Down
Larval carcass	21 ± 7	1 of 4	0.02	Down
S2 cells (growing)	55 ± 7	4 of 4	0.06	Down
Whole fly	963 ± 103	4 of 4

Looking for FBgn0039682. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720