FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039685 through 18771 annotations produced 1 hits

turn on sex-specificity (Obp99b):

Annotation Number : CG7592
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039685
Gbrowse : chr3R:25541972-25542532 (-) // 100.0 //
Probeset : 1623675_at
Accessions : protein= NP_651713;, nucleotide= NM_143456;
Pathway : 0005576 // extracellular region // inferred from sequence or structural similarity /// 0005576 // extracellular region /
Interpro : 0005549 // odorant binding // not recorded /// 0005549 // odorant binding // inferred from sequence or structural simila
FlyMine data for FBgn0039685.
BDGP gene expression has embryonic in situ data for Obp99b: 6 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0039685 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	14 ± 2	3 of 4	0.50	Down
Head	386 ± 152	4 of 4	12.40	None
Eye	226 ± 50	4 of 4	7.28	Up
Thoracicoabdominal ganglion	18 ± 4	2 of 4	0.60	None
Salivary gland	4 ± 2	0 of 4	0.14	Down
Crop	10 ± 1	0 of 4	0.30	Down
Midgut	8 ± 2	0 of 4	0.30	Down
Tubule	3 ± 1	0 of 4	0.10	Down
Hindgut	10 ± 4	0 of 4	0.30	Down
Heart	378 ± 77	4 of 4	12.18	Up
Fat body	253 ± 82	4 of 4	8.15	Up
Ovary	3 ± 1	0 of 4	0.10	Down
Testis	0 ± 0	0 of 4	0.00	Down
Male accessory glands	1 ± 0	0 of 4	0.00	Down
Virgin spermatheca	45 ± 8	4 of 4	1.45	None
Mated spermatheca	10 ± 5	2 of 4	0.32	Down
Adult carcass	322 ± 23	4 of 4	10.40	Up
Larval CNS	18 ± 7	4 of 4	0.61	None
Larval Salivary gland	5167 ± 129	4 of 4	166.17	Up
Larval midgut	16 ± 7	0 of 4	0.52	None
Larval tubule	974 ± 295	4 of 4	31.30	Up
Larval hindgut	1840 ± 651	4 of 4	59.18	None
Larval fat body	11135 ± 1200	4 of 4	358.10	Up
Larval trachea	594 ± 404	4 of 4	19.11	None
Larval carcass	889 ± 177	4 of 4	28.61	Up
S2 cells (growing)	3 ± 1	0 of 4	0.12	Down
Whole fly	31 ± 5	4 of 4

Looking for FBgn0039685. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720