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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039686 through 18771 annotations produced 1 hits



(CG15506):

Annotation Number : CG15506
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039686
Gbrowse : chr3R:25544400-25548111 (+) // 100.0 //
Probeset : 1629822_a_at
Accessions : protein= NP_651714; /// NP_733300;, nucleotide= NM_143457; /// NM_170421;
FlyMine data for FBgn0039686.
VDRC has 2 RNAi stocks for FBgn0039686 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.30Down
Head22 14 of 4 2.40Up
Eye8 12 of 4 0.90None
Thoracicoabdominal ganglion5 02 of 4 0.60Down
Salivary gland6 20 of 4 0.70None
Crop7 12 of 4 0.70None
Midgut6 10 of 4 0.60None
Tubule5 00 of 4 0.60Down
Hindgut6 00 of 4 0.70Down
Heart2 10 of 4 0.27Down
Fat body8 11 of 4 0.91None
Ovary2 00 of 4 0.30Down
Testis37 14 of 4 3.90Up
Male accessory glands4 10 of 4 0.40Down
Virgin spermatheca3 00 of 4 0.39Down
Mated spermatheca7 11 of 4 0.77None
Adult carcass24 14 of 4 2.60Up
Larval CNS12 14 of 4 1.25None
Larval Salivary gland2 00 of 4 0.25Down
Larval midgut6 20 of 4 0.65None
Larval tubule18 43 of 4 1.90None
Larval hindgut3 01 of 4 0.40Down
Larval fat body11 23 of 4 1.20None
Larval trachea3 21 of 4 0.39Down
Larval carcass15 62 of 4 1.58None
S2 cells (growing)20 04 of 4 2.12Up
Whole fly9 14 of 4

Looking for FBgn0039686. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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