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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039689 through 18771 annotations produced 1 hits



chr3R:25562691-25563792 (+) // 100.0 // (Complex I intermediate- associate protein 30):

Annotation Number : CG7598
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1640024_at
Accessions : protein= , nucleotide= NP_651718;
Pathway : "0006119 // oxidative phosphorylation // inferred from sequence or structural similarity /// 0006120 // mitochondrial el
Interpro : NADH to ubiquinone // inferred from sequence or structural similarity /// 0017004 // cytochrome complex assembly // non
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain144 ± 44 of 4 0.90None
Head177 ± 84 of 4 1.10None
Eye293 ± 134 of 4 1.77Up
Thoracicoabdominal ganglion155 ± 34 of 4 0.90None
Salivary gland374 ± 124 of 4 2.27Up
Crop213 ± 124 of 4 1.30Up
Midgut181 ± 44 of 4 1.10None
Tubule323 ± 94 of 4 2.00Up
Hindgut272 ± 54 of 4 1.60Up
Heart250 ± 34 of 4 1.52Up
Fat body205 ± 104 of 4 1.25Up
Ovary137 ± 34 of 4 0.80Down
Testis142 ± 34 of 4 0.90None
Male accessory glands160 ± 64 of 4 1.00None
Virgin spermatheca214 ± 14 of 4 1.30Up
Mated spermatheca201 ± 64 of 4 1.22Up
Adult carcass265 ± 54 of 4 1.60Up
Larval CNS95 ± 114 of 4 0.58Down
Larval Salivary gland313 ± 154 of 4 1.89Up
Larval midgut148 ± 64 of 4 0.90None
Larval tubule178 ± 54 of 4 1.10None
Larval hindgut143 ± 134 of 4 0.87None
Larval fat body160 ± 84 of 4 1.00None
Larval trachea121 ± 114 of 4 0.73Down
Larval carcass182 ± 104 of 4 1.10None
S2 cells (growing)442 ± 64 of 4 2.68Up
Whole fly165 ± 84 of 4

Looking for FBgn0039689. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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