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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039690 through 18771 annotations produced 3 hits



(CG1969):

Annotation Number : CG1969
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039690
Gbrowse : chr3R:25565814-25566470 (+) // 100.0 //
Probeset : 1636543_a_at
Accessions : protein= NP_651719; /// NP_733301;, nucleotide= NM_143462; /// NM_170422;
Interpro : 0004343 // glucosamine 6-phosphate N-acetyltransferase activity // non-traceable author statement /// 0004343 // glucosa
FlyMine data for FBgn0039690.
BDGP gene expression has embryonic in situ data for CG1969: 35 pix of staining in 6 body parts.
BioGrid reports that CG1969 interacts with CG1969 .
VDRC has 1 RNAi stocks for FBgn0039690 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain73 ± 24 of 4 1.10None
Head128 ± 94 of 4 2.00Up
Eye280 ± 324 of 4 4.35Up
Thoracicoabdominal ganglion83 ± 44 of 4 1.30Up
Salivary gland265 ± 94 of 4 4.11Up
Crop79 ± 54 of 4 1.20None
Midgut143 ± 44 of 4 2.20Up
Tubule70 ± 33 of 4 1.10None
Hindgut132 ± 94 of 4 2.10Up
Heart183 ± 124 of 4 2.84Up
Fat body322 ± 664 of 4 4.99Up
Ovary37 ± 14 of 4 0.60Down
Testis11 ± 00 of 4 0.20Down
Male accessory glands134 ± 84 of 4 2.10Up
Virgin spermatheca48 ± 00 of 4 0.75Down
Mated spermatheca52 ± 21 of 4 0.82Down
Adult carcass177 ± 104 of 4 2.70Up
Larval CNS60 ± 24 of 4 0.93None
Larval Salivary gland1699 ± 1084 of 426.30Up
Larval midgut54 ± 40 of 4 0.85None
Larval tubule60 ± 14 of 4 0.90None
Larval hindgut118 ± 24 of 4 1.83Up
Larval fat body55 ± 51 of 4 0.90None
Larval trachea273 ± 544 of 4 4.24Up
Larval carcass512 ± 304 of 4 7.94Up
S2 cells (growing)229 ± 104 of 4 3.56Up
Whole fly64 ± 34 of 4



(CG1969):

Annotation Number : CG1969
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039690
Gbrowse : chr3R:25565814-25566470 (+) // 100.0 //
Probeset : 1626181_at
Accessions : protein= NP_651719; /// NP_733301;, nucleotide= NM_143462; /// NM_170422;
Interpro : 0004343 // glucosamine 6-phosphate N-acetyltransferase activity // non-traceable author statement /// 0004343 // glucosa
FlyMine data for FBgn0039690.
BDGP gene expression has embryonic in situ data for CG1969: 35 pix of staining in 6 body parts.
BioGrid reports that CG1969 interacts with CG1969 .
VDRC has 1 RNAi stocks for FBgn0039690 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 04 of 4 2.00None
Head2 ± 10 of 4 0.70None
Eye3 ± 00 of 4 1.03None
Thoracicoabdominal ganglion6 ± 01 of 4 1.60None
Salivary gland6 ± 20 of 4 1.71None
Crop3 ± 10 of 4 0.90None
Midgut9 ± 20 of 4 2.50None
Tubule2 ± 00 of 4 0.70Down
Hindgut2 ± 00 of 4 0.60None
Heart2 ± 00 of 4 0.75None
Fat body5 ± 00 of 4 1.46None
Ovary2 ± 00 of 4 0.50None
Testis2 ± 00 of 4 0.80None
Male accessory glands5 ± 10 of 4 1.50None
Virgin spermatheca2 ± 00 of 4 0.77None
Mated spermatheca2 ± 10 of 4 0.64None
Adult carcass2 ± 00 of 4 0.70None
Larval CNS2 ± 00 of 4 0.68None
Larval Salivary gland5 ± 10 of 4 1.53None
Larval midgut5 ± 10 of 4 1.53None
Larval tubule5 ± 12 of 4 1.50None
Larval hindgut1 ± 00 of 4 0.33None
Larval fat body3 ± 10 of 4 1.00None
Larval trachea1 ± 10 of 4 0.43None
Larval carcass3 ± 00 of 4 0.87None
S2 cells (growing)2 ± 00 of 4 0.60None
Whole fly3 ± 20 of 4



(CG1969):

Annotation Number : CG1969
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039690
Gbrowse : chr3R:25565565-25567631 (+) // 100.0 //
Probeset : 1637778_a_at
Accessions : protein= NP_651719; /// NP_733301;, nucleotide= NM_143462; /// NM_170422;
Interpro : 0004343 // glucosamine 6-phosphate N-acetyltransferase activity // non-traceable author statement /// 0004343 // glucosa
FlyMine data for FBgn0039690.
BDGP gene expression has embryonic in situ data for CG1969: 35 pix of staining in 6 body parts.
BioGrid reports that CG1969 interacts with CG1969 .
VDRC has 1 RNAi stocks for FBgn0039690 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 ± 24 of 4 0.30Down
Head231 ± 74 of 4 1.70Up
Eye99 ± 84 of 4 0.75None
Thoracicoabdominal ganglion42 ± 14 of 4 0.30Down
Salivary gland739 ± 74 of 4 5.57Up
Crop112 ± 104 of 4 0.80None
Midgut215 ± 184 of 4 1.60Up
Tubule328 ± 194 of 4 2.50Up
Hindgut207 ± 134 of 4 1.60Up
Heart264 ± 204 of 4 2.00Up
Fat body741 ± 1004 of 4 5.59Up
Ovary80 ± 14 of 4 0.60Down
Testis15 ± 24 of 4 0.10Down
Male accessory glands364 ± 134 of 4 2.70Up
Virgin spermatheca551 ± 104 of 4 4.16Up
Mated spermatheca592 ± 254 of 4 4.47Up
Adult carcass367 ± 154 of 4 2.80Up
Larval CNS102 ± 34 of 4 0.77None
Larval Salivary gland2599 ± 874 of 419.58Up
Larval midgut107 ± 104 of 4 0.81None
Larval tubule96 ± 24 of 4 0.70None
Larval hindgut287 ± 114 of 4 2.16Up
Larval fat body73 ± 84 of 4 0.60Down
Larval trachea331 ± 454 of 4 2.50Up
Larval carcass1036 ± 664 of 4 7.81Up
S2 cells (growing)223 ± 84 of 4 1.68Up
Whole fly132 ± 144 of 4

Looking for FBgn0039690. 3 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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