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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039696 through 18771 annotations produced 1 hits



(CG7837):

Annotation Number : CG7837
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039696
Gbrowse : chr3R:25621418-25625055 (-) // 100.0 //
Probeset : 1632136_at
Accessions : protein= NP_651726;, nucleotide= NM_143469;
Pathway : "0000221 // vacuolar proton-transporting V-type ATPase
Interpro : V1 domain // inferred from electronic annotation 0005488 // binding // inferred from electronic annotation /// 0005515
FlyMine data for FBgn0039696.
VDRC has 3 RNAi stocks for FBgn0039696 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 14 of 4 0.90Down
Head33 34 of 4 0.40Down
Eye27 14 of 4 0.36Down
Thoracicoabdominal ganglion66 24 of 4 0.90None
Salivary gland45 74 of 4 0.61Down
Crop32 04 of 4 0.40Down
Midgut46 34 of 4 0.60Down
Tubule47 24 of 4 0.60Down
Hindgut32 24 of 4 0.40Down
Heart46 34 of 4 0.62Down
Fat body55 44 of 4 0.74Down
Ovary161 104 of 4 2.20Up
Testis29 04 of 4 0.40Down
Male accessory glands45 44 of 4 0.60Down
Virgin spermatheca51 24 of 4 0.68Down
Mated spermatheca44 34 of 4 0.60Down
Adult carcass47 14 of 4 0.60Down
Larval CNS81 124 of 4 1.09None
Larval Salivary gland28 24 of 4 0.38Down
Larval midgut40 24 of 4 0.54Down
Larval tubule106 24 of 4 1.40Up
Larval hindgut38 34 of 4 0.51Down
Larval fat body43 34 of 4 0.60Down
Larval trachea22 64 of 4 0.31Down
Larval carcass37 34 of 4 0.50Down
S2 cells (growing)94 24 of 4 1.26Up
Whole fly74 24 of 4

Looking for FBgn0039696. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime