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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039697 through 18771 annotations produced 1 hits



Electron transfer flavoprotein beta subunit (CG7834):

Annotation Number : CG7834
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039697
Gbrowse : chr3R:25627447-25628675 (-) // 100.0 //
Probeset : 1641659_s_at
Accessions : protein= NP_651727; /// NP_733307;, nucleotide= NM_143470; /// NM_170428;
Pathway : 0005811 // lipid particle // inferred from direct assay /// 0005875 // microtubule associated complex // inferred from d
Interpro : 0009055 // electron carrier activity // inferred from sequence or structural similarity /// 0009055 // electron carrier
FlyMine data for FBgn0039697.
BDGP gene expression has embryonic in situ data for CG7834: 10 pix of staining in 10 body parts.
Homophila reports that CG7834 is a close match (5e-70) to human gene ETFB;MADD (NP_001014763), a gene associated with Glutaricaciduria, type IIB, 231680 (3).
BioGrid reports that CG7834 interacts with CG8996 .
VDRC has 2 RNAi stocks for FBgn0039697 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain619 274 of 4 0.40Down
Head2034 1054 of 4 1.40Up
Eye824 304 of 4 0.56Down
Thoracicoabdominal ganglion799 234 of 4 0.50Down
Salivary gland1435 464 of 4 0.97None
Crop2066 714 of 4 1.40Up
Midgut1708 224 of 4 1.20None
Tubule3035 1494 of 4 2.10Up
Hindgut1899 294 of 4 1.30Up
Heart2069 1974 of 4 1.40None
Fat body3292 3374 of 4 2.22Up
Ovary1151 554 of 4 0.80Down
Testis120 54 of 4 0.10Down
Male accessory glands1358 244 of 4 0.90None
Virgin spermatheca3725 1234 of 4 2.52Up
Mated spermatheca3552 2104 of 4 2.40Up
Adult carcass2987 794 of 4 2.00Up
Larval CNS684 394 of 4 0.46Down
Larval Salivary gland2068 774 of 4 1.40Up
Larval midgut1330 594 of 4 0.90None
Larval tubule2554 1254 of 4 1.70Up
Larval hindgut1308 334 of 4 0.88None
Larval fat body1992 2604 of 4 1.30None
Larval trachea780 524 of 4 0.53Down
Larval carcass1125 774 of 4 0.76Down
S2 cells (growing)1020 234 of 4 0.69Down
Whole fly1480 884 of 4

Looking for FBgn0039697. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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