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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039698 through 18771 annotations produced 1 hits



chr3R:25628959-25630071 (+) // 100.0 // ():

Annotation Number : CG7789
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1630912_at
Accessions : protein= , nucleotide= NP_651728;
FlyMine data for full length.
BioGrid reports that CG7789 interacts with CG8120 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain107 ± 44 of 4 1.30Up
Head100 ± 44 of 4 1.20None
Eye208 ± 104 of 4 2.43Up
Thoracicoabdominal ganglion118 ± 44 of 4 1.40Up
Salivary gland151 ± 64 of 4 1.77Up
Crop136 ± 34 of 4 1.60Up
Midgut122 ± 44 of 4 1.40Up
Tubule129 ± 34 of 4 1.50Up
Hindgut106 ± 84 of 4 1.20None
Heart113 ± 64 of 4 1.33Up
Fat body110 ± 204 of 4 1.29None
Ovary132 ± 44 of 4 1.50Up
Testis11 ± 12 of 4 0.10Down
Male accessory glands94 ± 34 of 4 1.10None
Virgin spermatheca75 ± 44 of 4 0.87None
Mated spermatheca70 ± 84 of 4 0.82None
Adult carcass106 ± 14 of 4 1.20Up
Larval CNS79 ± 24 of 4 0.93None
Larval Salivary gland106 ± 174 of 4 1.24None
Larval midgut65 ± 24 of 4 0.76Down
Larval tubule168 ± 64 of 4 2.00Up
Larval hindgut75 ± 24 of 4 0.88None
Larval fat body134 ± 104 of 4 1.60Up
Larval trachea106 ± 74 of 4 1.24Up
Larval carcass71 ± 34 of 4 0.84None
S2 cells (growing)242 ± 04 of 4 2.83Up
Whole fly85 ± 44 of 4

Looking for FBgn0039698. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime