FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039709 through 18771 annotations produced 1 hits

Cad99C (Cad99C):

Annotation Number : CG31009
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039709
Gbrowse : chr3R:25671325-25680425 (+) // 100.0 //
Probeset : 1630399_at
Accessions : protein= NP_733314;, nucleotide= NM_170435;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0005887 // integral to plasma membrane // inferred
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0039709.
BDGP gene expression has embryonic in situ data for Cad99C: 4 pix of staining in 1 body parts.
Homophila reports that CG31009 is a close match (4e-13) to human gene ARVD11;DSC2;DSC3 (NP_004940), a gene associated with Arrhythmogenic right ventricular dysplasia, familial, 11, 610476 (3).
TRiP has 3 RNAi stocks for FBgn0039709 available for purchase.
VDRC has 7 RNAi stocks for FBgn0039709 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 1	0 of 4	0.10	Down
Head	37 ± 3	4 of 4	1.10	None
Eye	99 ± 8	4 of 4	2.83	Up
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.00	Down
Salivary gland	7 ± 3	0 of 4	0.21	Down
Crop	103 ± 7	4 of 4	2.90	Up
Midgut	7 ± 3	0 of 4	0.20	Down
Tubule	4 ± 0	0 of 4	0.10	Down
Hindgut	29 ± 2	3 of 4	0.80	None
Heart	5 ± 1	0 of 4	0.15	Down
Fat body	6 ± 5	0 of 4	0.19	Down
Ovary	52 ± 4	4 of 4	1.50	Up
Testis	2 ± 0	0 of 4	0.10	Down
Male accessory glands	4 ± 2	0 of 4	0.10	Down
Virgin spermatheca	2 ± 0	0 of 4	0.06	Down
Mated spermatheca	6 ± 1	0 of 4	0.20	Down
Adult carcass	26 ± 1	0 of 4	0.80	None
Larval CNS	37 ± 2	4 of 4	1.07	None
Larval Salivary gland	16 ± 2	1 of 4	0.46	Down
Larval midgut	11 ± 2	0 of 4	0.31	Down
Larval tubule	174 ± 11	4 of 4	5.00	Up
Larval hindgut	161 ± 3	4 of 4	4.60	Up
Larval fat body	0 ± 0	0 of 4	0.00	Down
Larval trachea	228 ± 41	4 of 4	6.50	Up
Larval carcass	401 ± 51	4 of 4	11.41	Up
S2 cells (growing)	1 ± 0	0 of 4	0.03	Down
Whole fly	35 ± 2	1 of 4

Looking for FBgn0039709. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720