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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039734 through 18771 annotations produced 1 hits



Tace (Tace):

Annotation Number : CG7908
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039734
Gbrowse : chr3R:25826275-25829401 (+) // 100.0 //
Probeset : 1639144_a_at
Accessions : protein= NP_651759; /// NP_733334;, nucleotide= NM_143502; /// NM_170455;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0039734.
VDRC has 2 RNAi stocks for FBgn0039734 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain470 ± 124 of 436.80Up
Head103 ± 74 of 4 8.10Up
Eye76 ± 74 of 4 6.01Up
Thoracicoabdominal ganglion326 ± 114 of 425.50Up
Salivary gland1 ± 00 of 4 0.10Down
Crop0 ± 00 of 4 0.10Down
Midgut0 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.20Down
Hindgut0 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.10Down
Fat body1 ± 00 of 4 0.08Down
Ovary0 ± 00 of 4 0.10Down
Testis49 ± 24 of 4 3.90Up
Male accessory glands2 ± 00 of 4 0.20Down
Virgin spermatheca0 ± 00 of 4 0.04Down
Mated spermatheca0 ± 00 of 4 0.05Down
Adult carcass1 ± 00 of 4 0.10Down
Larval CNS296 ± 204 of 423.17Up
Larval Salivary gland1 ± 00 of 4 0.08Down
Larval midgut1 ± 00 of 4 0.07Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut0 ± 00 of 4 0.04Down
Larval fat body5 ± 20 of 4 0.40None
Larval trachea4 ± 40 of 4 0.34Down
Larval carcass1 ± 00 of 4 0.15Down
S2 cells (growing)1 ± 00 of 4 0.14Down
Whole fly12 ± 11 of 4

Looking for FBgn0039734. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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