FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039737 through 18771 annotations produced 3 hits

(CG7920):

Annotation Number : CG7920
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039737
Gbrowse : chr3R:25840263-25841086 (-) // 100.0 //
Probeset : 1628339_a_at
Accessions : protein= NP_651762; /// NP_733335;, nucleotide= NM_143505; /// NM_170456;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0008411 // 4-hydroxybutyrate CoA-transferase ac
FlyMine data for FBgn0039737.
BDGP gene expression has embryonic in situ data for CG7920: 37 pix of staining in 13 body parts.
VDRC has 1 RNAi stocks for FBgn0039737 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	606 ± 48	4 of 4	0.80	None
Head	1112 ± 73	4 of 4	1.50	Up
Eye	676 ± 62	4 of 4	0.90	None
Thoracicoabdominal ganglion	426 ± 56	4 of 4	0.60	Down
Salivary gland	671 ± 22	4 of 4	0.90	None
Crop	732 ± 32	4 of 4	1.00	None
Midgut	485 ± 21	4 of 4	0.60	Down
Tubule	121 ± 6	4 of 4	0.20	Down
Hindgut	809 ± 40	4 of 4	1.10	None
Heart	1390 ± 141	4 of 4	1.85	Up
Fat body	1408 ± 561	4 of 4	1.88	None
Ovary	202 ± 9	4 of 4	0.30	Down
Testis	467 ± 3	4 of 4	0.60	Down
Male accessory glands	250 ± 11	4 of 4	0.30	Down
Virgin spermatheca	75 ± 7	4 of 4	0.10	Down
Mated spermatheca	65 ± 6	4 of 4	0.09	Down
Adult carcass	2243 ± 45	4 of 4	3.00	Up
Larval CNS	355 ± 37	4 of 4	0.47	Down
Larval Salivary gland	426 ± 65	4 of 4	0.57	Down
Larval midgut	469 ± 53	4 of 4	0.63	Down
Larval tubule	189 ± 36	4 of 4	0.30	Down
Larval hindgut	517 ± 33	4 of 4	0.69	Down
Larval fat body	777 ± 109	4 of 4	1.00	None
Larval trachea	825 ± 182	4 of 4	1.10	None
Larval carcass	528 ± 44	4 of 4	0.70	Down
S2 cells (growing)	645 ± 25	4 of 4	0.86	None
Whole fly	750 ± 71	4 of 4

(CG7920):

Annotation Number : CG7920
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr3R:25840263-25841086 (-) // 100.0 //
Probeset : 1625435_at
Accessions : protein= NP_651762; /// NP_733335;, nucleotide= NM_143505; /// NM_170456;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0008411 // 4-hydroxybutyrate CoA-transferase ac

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 1	3 of 4	1.20	None
Head	9 ± 1	3 of 4	1.40	None
Eye	5 ± 0	1 of 4	0.77	None
Thoracicoabdominal ganglion	7 ± 1	0 of 4	1.00	None
Salivary gland	14 ± 3	0 of 4	2.11	None
Crop	9 ± 3	1 of 4	1.30	None
Midgut	15 ± 4	3 of 4	2.10	None
Tubule	4 ± 1	0 of 4	0.60	Down
Hindgut	10 ± 1	0 of 4	1.40	None
Heart	7 ± 1	2 of 4	1.07	None
Fat body	18 ± 3	4 of 4	2.65	Up
Ovary	3 ± 1	1 of 4	0.50	None
Testis	3 ± 1	0 of 4	0.50	None
Male accessory glands	9 ± 2	0 of 4	1.30	None
Virgin spermatheca	4 ± 1	0 of 4	0.63	None
Mated spermatheca	5 ± 1	0 of 4	0.81	None
Adult carcass	10 ± 3	1 of 4	1.60	None
Larval CNS	3 ± 2	1 of 4	0.53	None
Larval Salivary gland	5 ± 2	0 of 4	0.77	None
Larval midgut	8 ± 2	1 of 4	1.15	None
Larval tubule	5 ± 2	0 of 4	0.80	None
Larval hindgut	4 ± 0	0 of 4	0.59	None
Larval fat body	11 ± 1	2 of 4	1.70	None
Larval trachea	4 ± 3	0 of 4	0.60	None
Larval carcass	7 ± 1	0 of 4	1.03	None
S2 cells (growing)	6 ± 2	2 of 4	0.86	None
Whole fly	7 ± 1	1 of 4

(CG7920):

Annotation Number : CG7920
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039737
Gbrowse : chr3R:25836188-25841086 (-) // 100.0 //
Probeset : 1635589_at
Accessions : protein= NP_651762; /// NP_733335;, nucleotide= NM_143505; /// NM_170456;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0008411 // 4-hydroxybutyrate CoA-transferase ac
FlyMine data for FBgn0039737.
BDGP gene expression has embryonic in situ data for CG7920: 37 pix of staining in 13 body parts.
VDRC has 1 RNAi stocks for FBgn0039737 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1433 ± 32	4 of 4	0.80	Down
Head	2625 ± 94	4 of 4	1.40	Up
Eye	2229 ± 110	4 of 4	1.19	Up
Thoracicoabdominal ganglion	1635 ± 34	4 of 4	0.90	Down
Salivary gland	3432 ± 125	4 of 4	1.84	Up
Crop	1814 ± 51	4 of 4	1.00	None
Midgut	1490 ± 52	4 of 4	0.80	Down
Tubule	3125 ± 50	4 of 4	1.70	Up
Hindgut	2131 ± 65	4 of 4	1.10	Up
Heart	3986 ± 312	4 of 4	2.13	Up
Fat body	4110 ± 500	4 of 4	2.20	Up
Ovary	554 ± 48	4 of 4	0.30	Down
Testis	1220 ± 20	4 of 4	0.70	Down
Male accessory glands	846 ± 15	4 of 4	0.50	Down
Virgin spermatheca	4489 ± 195	4 of 4	2.40	Up
Mated spermatheca	4086 ± 117	4 of 4	2.19	Up
Adult carcass	5104 ± 198	4 of 4	2.70	Up
Larval CNS	1190 ± 133	4 of 4	0.64	Down
Larval Salivary gland	2141 ± 131	4 of 4	1.15	None
Larval midgut	1692 ± 136	4 of 4	0.91	None
Larval tubule	433 ± 37	4 of 4	0.20	Down
Larval hindgut	2029 ± 70	4 of 4	1.09	None
Larval fat body	1905 ± 150	4 of 4	1.00	None
Larval trachea	2148 ± 379	4 of 4	1.15	None
Larval carcass	2265 ± 189	4 of 4	1.21	None
S2 cells (growing)	1039 ± 24	4 of 4	0.56	Down
Whole fly	1869 ± 51	4 of 4

Looking for FBgn0039737. 3 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720