FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039741 through 18771 annotations produced 1 hits

(CG7943):

Annotation Number : CG7943
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039741
Gbrowse : chr3R:25872196-25874393 (+) // 100.0 //
Probeset : 1631054_s_at
Accessions : protein= NP_651766; /// NP_733341;, nucleotide= NM_143509; /// NM_170462;
Pathway : 0005740 // mitochondrial envelope // inferred from sequence or structural similarity /// 0016020 // membrane // inferred
Interpro : 0005488 // binding // inferred from electronic annotation /// 0022857 // transmembrane transporter activity // inferred
FlyMine data for FBgn0039741.
BDGP gene expression has embryonic in situ data for CG7943: 16 pix of staining in 8 body parts.
VDRC has 1 RNAi stocks for FBgn0039741 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	280 ± 5	4 of 4	1.30	Up
Head	140 ± 6	4 of 4	0.70	Down
Eye	89 ± 4	4 of 4	0.43	Down
Thoracicoabdominal ganglion	251 ± 4	4 of 4	1.20	Up
Salivary gland	264 ± 12	4 of 4	1.27	Up
Crop	155 ± 6	4 of 4	0.70	Down
Midgut	216 ± 7	4 of 4	1.00	None
Tubule	450 ± 12	4 of 4	2.20	Up
Hindgut	165 ± 2	4 of 4	0.80	Down
Heart	162 ± 2	4 of 4	0.78	Down
Fat body	175 ± 7	4 of 4	0.85	Down
Ovary	406 ± 5	4 of 4	2.00	Up
Testis	32 ± 1	4 of 4	0.20	Down
Male accessory glands	82 ± 3	4 of 4	0.40	Down
Virgin spermatheca	147 ± 6	4 of 4	0.71	Down
Mated spermatheca	137 ± 11	4 of 4	0.66	Down
Adult carcass	181 ± 15	4 of 4	0.90	None
Larval CNS	115 ± 10	4 of 4	0.55	Down
Larval Salivary gland	125 ± 7	4 of 4	0.60	Down
Larval midgut	238 ± 18	4 of 4	1.15	None
Larval tubule	168 ± 7	4 of 4	0.80	Down
Larval hindgut	202 ± 13	4 of 4	0.97	None
Larval fat body	65 ± 4	4 of 4	0.30	Down
Larval trachea	113 ± 14	4 of 4	0.55	Down
Larval carcass	199 ± 19	4 of 4	0.96	None
S2 cells (growing)	133 ± 2	4 of 4	0.64	Down
Whole fly	207 ± 6	4 of 4

Looking for FBgn0039741. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720