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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039743 through 18771 annotations produced 1 hits



(CG7946):

Annotation Number : CG7946
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039743
Gbrowse : chr3R:25878235-25880420 (+) // 100.0 //
Probeset : 1630992_at
Accessions : protein= NP_651768;, nucleotide= NM_143511;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039743.
BDGP gene expression has embryonic in situ data for CG7946: 4 pix of staining in 1 body parts.
BioGrid reports that CG7946 interacts with CG9949 .
VDRC has 3 RNAi stocks for FBgn0039743 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain256 ± 44 of 4 1.30Up
Head165 ± 54 of 4 0.90Down
Eye185 ± 24 of 4 0.96None
Thoracicoabdominal ganglion246 ± 34 of 4 1.30Up
Salivary gland223 ± 104 of 4 1.16Up
Crop179 ± 14 of 4 0.90Down
Midgut128 ± 54 of 4 0.70Down
Tubule178 ± 24 of 4 0.90Down
Hindgut157 ± 34 of 4 0.80Down
Heart110 ± 44 of 4 0.58Down
Fat body139 ± 84 of 4 0.73Down
Ovary343 ± 124 of 4 1.80Up
Testis260 ± 94 of 4 1.40Up
Male accessory glands240 ± 214 of 4 1.30None
Virgin spermatheca126 ± 104 of 4 0.66Down
Mated spermatheca130 ± 14 of 4 0.68Down
Adult carcass130 ± 114 of 4 0.70Down
Larval CNS571 ± 314 of 4 2.98Up
Larval Salivary gland374 ± 234 of 4 1.95Up
Larval midgut103 ± 44 of 4 0.54Down
Larval tubule167 ± 64 of 4 0.90Down
Larval hindgut169 ± 24 of 4 0.88Down
Larval fat body166 ± 194 of 4 0.90None
Larval trachea233 ± 144 of 4 1.22Up
Larval carcass127 ± 74 of 4 0.66Down
S2 cells (growing)312 ± 64 of 4 1.63Up
Whole fly192 ± 34 of 4

Looking for FBgn0039743. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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