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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039747 through 18771 annotations produced 1 hits



chr3R:25960996-25964247 (-) // 100.0 // (Adenosine receptor):

Annotation Number : CG9753
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1638877_at
Accessions : protein= , nucleotide= NP_651772;
Pathway : 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein
Interpro : 0016021 // integral to membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred f
FlyMine data for full length.
Homophila reports that CG9753 is a close match (9e-11) to human gene SSTR5 (NP_001044), a gene associated with Acromegaly, 102200 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain24 24 of 4 3.30Up
Head11 13 of 4 1.60None
Eye10 14 of 4 1.43None
Thoracicoabdominal ganglion28 14 of 4 3.80Up
Salivary gland21 50 of 4 2.89None
Crop10 20 of 4 1.40None
Midgut23 31 of 4 3.10Up
Tubule8 10 of 4 1.20None
Hindgut28 14 of 4 3.80Up
Heart9 13 of 4 1.29None
Fat body12 21 of 4 1.67None
Ovary2 00 of 4 0.30None
Testis7 10 of 4 1.00None
Male accessory glands6 30 of 4 0.80None
Virgin spermatheca7 21 of 4 0.99None
Mated spermatheca6 00 of 4 0.85None
Adult carcass11 20 of 4 1.50None
Larval CNS9 13 of 4 1.25None
Larval Salivary gland9 10 of 4 1.23None
Larval midgut18 24 of 4 2.52Up
Larval tubule5 10 of 4 0.70None
Larval hindgut131 24 of 417.71Up
Larval fat body7 11 of 4 1.00None
Larval trachea112 174 of 415.08Up
Larval carcass23 22 of 4 3.14Up
S2 cells (growing)3 10 of 4 0.52None
Whole fly7 11 of 4

Looking for FBgn0039747. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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