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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039757 through 18771 annotations produced 2 hits



Ribosomal protein S7 (RpS7):

Annotation Number : CG1883
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039757
Gbrowse : chr3R:26032239-26034742 (-) // 100.0 //
Probeset : 1638615_s_at
Accessions : protein= NP_651782; /// NP_733355; /// NP_733356; /// NP_996312;, nucleotide= NM_143525; /// NM_170476; /// NM_170477; /// NM_206589;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0039757.
BDGP gene expression has embryonic in situ data for CG1883: 4 pix of staining in 1 body parts.
BioGrid reports that CG1883 interacts with CG2925 CG30011 CG32772 CG33193 CG3427 CG3847 CG4893 CG5930 CG6353 CG7146 CG7231 CG7352 CG8120 CG8316 CG8368 CG8383 CG8667 CG9173 CG9331 .
VDRC has 3 RNAi stocks for FBgn0039757 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3121 894 of 4 0.80Down
Head4626 504 of 4 1.20Up
Eye5579 1224 of 4 1.41Up
Thoracicoabdominal ganglion3811 674 of 4 1.00None
Salivary gland11368 1804 of 4 2.88Up
Crop6366 3524 of 4 1.60Up
Midgut5358 1084 of 4 1.40Up
Tubule3947 1324 of 4 1.00None
Hindgut5373 1364 of 4 1.40Up
Heart6284 4254 of 4 1.59Up
Fat body5960 8014 of 4 1.51Up
Ovary3735 944 of 4 0.90None
Testis1023 474 of 4 0.30Down
Male accessory glands8842 2544 of 4 2.20Up
Virgin spermatheca4207 3464 of 4 1.06None
Mated spermatheca4476 914 of 4 1.13Up
Adult carcass5641 834 of 4 1.40Up
Larval CNS2805 1194 of 4 0.71Down
Larval Salivary gland7509 2344 of 4 1.90Up
Larval midgut3778 1044 of 4 0.96None
Larval tubule5079 754 of 4 1.30Up
Larval hindgut4382 644 of 4 1.11None
Larval fat body7760 8074 of 4 2.00Up
Larval trachea6250 1594 of 4 1.58Up
Larval carcass4893 4114 of 4 1.24None
S2 cells (growing)4576 674 of 4 1.16Up
Whole fly3951 1464 of 4



Ribosomal protein S7 (RpS7):

Annotation Number : CG1883
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039757
Gbrowse : chr3R:26033562-26034390 (-) // 100.0 //
Probeset : 1627181_at
Accessions : protein= NP_651782; /// NP_733355; /// NP_733356; /// NP_996312;, nucleotide= NM_143525; /// NM_170476; /// NM_170477; /// NM_206589;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0039757.
BDGP gene expression has embryonic in situ data for CG1883: 4 pix of staining in 1 body parts.
BioGrid reports that CG1883 interacts with CG2925 CG30011 CG32772 CG33193 CG3427 CG3847 CG4893 CG5930 CG6353 CG7146 CG7231 CG7352 CG8120 CG8316 CG8368 CG8383 CG8667 CG9173 CG9331 .
VDRC has 3 RNAi stocks for FBgn0039757 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 20 of 4 1.00None
Head10 00 of 4 1.00None
Eye8 00 of 4 0.78None
Thoracicoabdominal ganglion9 30 of 4 0.90None
Salivary gland26 30 of 4 2.50Up
Crop15 30 of 4 1.40None
Midgut22 10 of 4 2.10Up
Tubule13 20 of 4 1.20None
Hindgut12 20 of 4 1.20None
Heart7 10 of 4 0.75None
Fat body22 30 of 4 2.08Up
Ovary9 11 of 4 0.90None
Testis7 10 of 4 0.70None
Male accessory glands18 30 of 4 1.80None
Virgin spermatheca19 10 of 4 1.86Up
Mated spermatheca14 10 of 4 1.40None
Adult carcass15 40 of 4 1.40None
Larval CNS13 21 of 4 1.31None
Larval Salivary gland19 20 of 4 1.87Up
Larval midgut18 20 of 4 1.71Up
Larval tubule11 10 of 4 1.10None
Larval hindgut10 00 of 4 1.03None
Larval fat body8 20 of 4 0.80None
Larval trachea14 22 of 4 1.38None
Larval carcass16 10 of 4 1.58Up
S2 cells (growing)21 12 of 4 2.00Up
Whole fly10 10 of 4

Looking for FBgn0039757. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime