FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039757 through 18771 annotations produced 2 hits

Ribosomal protein S7 (RpS7):

Annotation Number : CG1883
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039757
Gbrowse : chr3R:26032239-26034742 (-) // 100.0 //
Probeset : 1638615_s_at
Accessions : protein= NP_651782; /// NP_733355; /// NP_733356; /// NP_996312;, nucleotide= NM_143525; /// NM_170476; /// NM_170477; /// NM_206589;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0039757.
BDGP gene expression has embryonic in situ data for CG1883: 4 pix of staining in 1 body parts.
BioGrid reports that CG1883 interacts with CG2925 CG30011 CG32772 CG33193 CG3427 CG3847 CG4893 CG5930 CG6353 CG7146 CG7231 CG7352 CG8120 CG8316 CG8368 CG8383 CG8667 CG9173 CG9331 .
VDRC has 3 RNAi stocks for FBgn0039757 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3121 ± 89	4 of 4	0.80	Down
Head	4626 ± 50	4 of 4	1.20	Up
Eye	5579 ± 122	4 of 4	1.41	Up
Thoracicoabdominal ganglion	3811 ± 67	4 of 4	1.00	None
Salivary gland	11368 ± 180	4 of 4	2.88	Up
Crop	6366 ± 352	4 of 4	1.60	Up
Midgut	5358 ± 108	4 of 4	1.40	Up
Tubule	3947 ± 132	4 of 4	1.00	None
Hindgut	5373 ± 136	4 of 4	1.40	Up
Heart	6284 ± 425	4 of 4	1.59	Up
Fat body	5960 ± 801	4 of 4	1.51	Up
Ovary	3735 ± 94	4 of 4	0.90	None
Testis	1023 ± 47	4 of 4	0.30	Down
Male accessory glands	8842 ± 254	4 of 4	2.20	Up
Virgin spermatheca	4207 ± 346	4 of 4	1.06	None
Mated spermatheca	4476 ± 91	4 of 4	1.13	Up
Adult carcass	5641 ± 83	4 of 4	1.40	Up
Larval CNS	2805 ± 119	4 of 4	0.71	Down
Larval Salivary gland	7509 ± 234	4 of 4	1.90	Up
Larval midgut	3778 ± 104	4 of 4	0.96	None
Larval tubule	5079 ± 75	4 of 4	1.30	Up
Larval hindgut	4382 ± 64	4 of 4	1.11	None
Larval fat body	7760 ± 807	4 of 4	2.00	Up
Larval trachea	6250 ± 159	4 of 4	1.58	Up
Larval carcass	4893 ± 411	4 of 4	1.24	None
S2 cells (growing)	4576 ± 67	4 of 4	1.16	Up
Whole fly	3951 ± 146	4 of 4

Ribosomal protein S7 (RpS7):

Annotation Number : CG1883
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039757
Gbrowse : chr3R:26033562-26034390 (-) // 100.0 //
Probeset : 1627181_at
Accessions : protein= NP_651782; /// NP_733355; /// NP_733356; /// NP_996312;, nucleotide= NM_143525; /// NM_170476; /// NM_170477; /// NM_206589;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0039757.
BDGP gene expression has embryonic in situ data for CG1883: 4 pix of staining in 1 body parts.
BioGrid reports that CG1883 interacts with CG2925 CG30011 CG32772 CG33193 CG3427 CG3847 CG4893 CG5930 CG6353 CG7146 CG7231 CG7352 CG8120 CG8316 CG8368 CG8383 CG8667 CG9173 CG9331 .
VDRC has 3 RNAi stocks for FBgn0039757 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	11 ± 2	0 of 4	1.00	None
Head	10 ± 0	0 of 4	1.00	None
Eye	8 ± 0	0 of 4	0.78	None
Thoracicoabdominal ganglion	9 ± 3	0 of 4	0.90	None
Salivary gland	26 ± 3	0 of 4	2.50	Up
Crop	15 ± 3	0 of 4	1.40	None
Midgut	22 ± 1	0 of 4	2.10	Up
Tubule	13 ± 2	0 of 4	1.20	None
Hindgut	12 ± 2	0 of 4	1.20	None
Heart	7 ± 1	0 of 4	0.75	None
Fat body	22 ± 3	0 of 4	2.08	Up
Ovary	9 ± 1	1 of 4	0.90	None
Testis	7 ± 1	0 of 4	0.70	None
Male accessory glands	18 ± 3	0 of 4	1.80	None
Virgin spermatheca	19 ± 1	0 of 4	1.86	Up
Mated spermatheca	14 ± 1	0 of 4	1.40	None
Adult carcass	15 ± 4	0 of 4	1.40	None
Larval CNS	13 ± 2	1 of 4	1.31	None
Larval Salivary gland	19 ± 2	0 of 4	1.87	Up
Larval midgut	18 ± 2	0 of 4	1.71	Up
Larval tubule	11 ± 1	0 of 4	1.10	None
Larval hindgut	10 ± 0	0 of 4	1.03	None
Larval fat body	8 ± 2	0 of 4	0.80	None
Larval trachea	14 ± 2	2 of 4	1.38	None
Larval carcass	16 ± 1	0 of 4	1.58	Up
S2 cells (growing)	21 ± 1	2 of 4	2.00	Up
Whole fly	10 ± 1	0 of 4

Looking for FBgn0039757. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720