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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039758 through 18771 annotations produced 1 hits



(CG9737):

Annotation Number : CG9737
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039758
Gbrowse : chr3R:26066984-26069032 (-) // 100.0 //
Probeset : 1624316_at
Accessions : protein= NP_651783;, nucleotide= NM_143526;
Pathway : engulfment // inferred from mutant phenotype"
FlyMine data for FBgn0039758.
Homophila reports that CG9737 is a close match (2e-12) to human gene F7 (NP_062562), a gene associated with Factor VII deficiency (3);{Myocardial infarction, decreased susceptibility to} (3).
VDRC has 2 RNAi stocks for FBgn0039758 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.80None
Head1 ± 00 of 4 0.40Down
Eye2 ± 00 of 4 0.56None
Thoracicoabdominal ganglion3 ± 10 of 4 0.70None
Salivary gland10 ± 40 of 4 2.00None
Crop3 ± 10 of 4 0.70None
Midgut1 ± 00 of 4 0.30Down
Tubule2 ± 00 of 4 0.50Down
Hindgut2 ± 10 of 4 0.60None
Heart2 ± 00 of 4 0.49Down
Fat body5 ± 20 of 4 1.13None
Ovary3 ± 00 of 4 0.60None
Testis52 ± 34 of 410.30Up
Male accessory glands3 ± 10 of 4 0.80None
Virgin spermatheca5 ± 00 of 4 0.98None
Mated spermatheca5 ± 10 of 4 1.07None
Adult carcass2 ± 00 of 4 0.50Down
Larval CNS9 ± 11 of 4 1.85Up
Larval Salivary gland243 ± 134 of 448.00Up
Larval midgut1 ± 00 of 4 0.26Down
Larval tubule1 ± 00 of 4 0.30Down
Larval hindgut16 ± 12 of 4 3.24Up
Larval fat body6 ± 20 of 4 1.30None
Larval trachea18 ± 23 of 4 3.72Up
Larval carcass15 ± 51 of 4 3.08None
S2 cells (growing)1 ± 00 of 4 0.21Down
Whole fly5 ± 00 of 4

Looking for FBgn0039758. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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