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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039759 through 18771 annotations produced 1 hits

POAE-like Serine protease (CG9733):

Annotation Number : CG9733
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039759
Gbrowse : chr3R:26069697-26072425 (-) // 100.0 //
Probeset : 1640085_at
Accessions : protein= NP_651784;, nucleotide= NM_143527;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0039759.
BDGP gene expression has embryonic in situ data for CG9733: 4 pix of staining in 1 body parts.
Homophila reports that CG9733 is a close match (7e-12) to human gene IF (NP_000195), a gene associated with C3b inactivator deficiency (3).
VDRC has 2 RNAi stocks for FBgn0039759 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20None
Head37 72 of 4 7.10Up
Eye15 71 of 4 2.97None
Thoracicoabdominal ganglion0 00 of 4 0.20None
Salivary gland1 00 of 4 0.33None
Crop1 00 of 4 0.20None
Midgut1 00 of 4 0.30None
Tubule0 00 of 4 0.10Down
Hindgut10 10 of 4 2.00None
Heart0 00 of 4 0.06None
Fat body0 00 of 4 0.14None
Ovary0 00 of 4 0.10None
Testis1 00 of 4 0.20None
Male accessory glands1 00 of 4 0.30None
Virgin spermatheca1 00 of 4 0.21None
Mated spermatheca7 30 of 4 1.37None
Adult carcass26 20 of 4 5.10Up
Larval CNS8 40 of 4 1.67None
Larval Salivary gland1 00 of 4 0.28None
Larval midgut1 00 of 4 0.23None
Larval tubule0 00 of 4 0.20None
Larval hindgut6 50 of 4 1.22None
Larval fat body1 00 of 4 0.20None
Larval trachea1 00 of 4 0.23None
Larval carcass101 363 of 419.61None
S2 cells (growing)0 00 of 4 0.16None
Whole fly5 20 of 4

Looking for FBgn0039759. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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