FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039767 through 18771 annotations produced 1 hits

(CG2218):

Annotation Number : CG2218
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039767
Gbrowse : chr3R:26251115-26253998 (-) // 100.0 //
Probeset : 1632484_at
Accessions : protein= NP_651790;, nucleotide= NM_143533;
Pathway : 0000151 // ubiquitin ligase complex // inferred from electronic annotation
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0016874 // ligase activity // in
FlyMine data for FBgn0039767.
BioGrid reports that CG2218 interacts with CG33484 CG7238 CG7524 .
VDRC has 2 RNAi stocks for FBgn0039767 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	244 ± 4	4 of 4	0.70	Down
Head	219 ± 9	4 of 4	0.70	Down
Eye	164 ± 15	4 of 4	0.50	Down
Thoracicoabdominal ganglion	235 ± 7	4 of 4	0.70	Down
Salivary gland	143 ± 6	4 of 4	0.43	Down
Crop	191 ± 5	4 of 4	0.60	Down
Midgut	199 ± 9	4 of 4	0.60	Down
Tubule	262 ± 6	4 of 4	0.80	Down
Hindgut	169 ± 3	4 of 4	0.50	Down
Heart	242 ± 9	4 of 4	0.73	Down
Fat body	462 ± 7	4 of 4	1.40	Up
Ovary	753 ± 12	4 of 4	2.30	Up
Testis	274 ± 8	4 of 4	0.80	Down
Male accessory glands	250 ± 8	4 of 4	0.80	Down
Virgin spermatheca	809 ± 62	4 of 4	2.45	Up
Mated spermatheca	755 ± 33	4 of 4	2.29	Up
Adult carcass	253 ± 16	4 of 4	0.80	Down
Larval CNS	536 ± 26	4 of 4	1.62	Up
Larval Salivary gland	241 ± 4	4 of 4	0.73	Down
Larval midgut	202 ± 9	4 of 4	0.61	Down
Larval tubule	294 ± 15	4 of 4	0.90	None
Larval hindgut	233 ± 15	4 of 4	0.71	Down
Larval fat body	416 ± 24	4 of 4	1.30	Up
Larval trachea	339 ± 12	4 of 4	1.03	None
Larval carcass	220 ± 19	4 of 4	0.67	Down
S2 cells (growing)	428 ± 7	4 of 4	1.30	Up
Whole fly	330 ± 7	4 of 4

Looking for FBgn0039767. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720