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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039769 through 18771 annotations produced 1 hits


Annotation Number : CG15534
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039769
Gbrowse : chr3R:26257785-26260698 (+) // 100.0 //
Probeset : 1629367_at
Accessions : protein= NP_651792;, nucleotide= NM_143535;
Interpro : 0004767 // sphingomyelin phosphodiesterase activity // inferred from sequence or structural similarity /// 0004767 // sp
FlyMine data for FBgn0039769.
Homophila reports that CG15534 is a close match (7e-54) to human gene NPD;SMPD1 (NP_001007594), a gene associated with Niemann-Pick disease, type A, 257200 (3);Niemann-Pick disease, type B, 607616 (3).
TRiP has 1 RNAi stocks for FBgn0039769 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039769 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00None
Head0 00 of 4 0.00None
Eye2 10 of 4 0.04None
Thoracicoabdominal ganglion0 00 of 4 0.00None
Salivary gland2 00 of 4 0.04None
Crop1 10 of 4 0.00None
Midgut588 434 of 4 9.90Up
Tubule2 00 of 4 0.00Down
Hindgut0 00 of 4 0.00None
Heart2 10 of 4 0.05None
Fat body1 10 of 4 0.03None
Ovary0 00 of 4 0.00None
Testis0 00 of 4 0.00None
Male accessory glands1 00 of 4 0.00None
Virgin spermatheca1 00 of 4 0.03None
Mated spermatheca1 00 of 4 0.02None
Adult carcass2 00 of 4 0.00None
Larval CNS0 00 of 4 0.01None
Larval Salivary gland0 00 of 4 0.01None
Larval midgut1520 1124 of 425.69Up
Larval tubule2 10 of 4 0.00None
Larval hindgut0 00 of 4 0.01None
Larval fat body3 10 of 4 0.10None
Larval trachea0 00 of 4 0.01None
Larval carcass0 00 of 4 0.01None
S2 cells (growing)1 00 of 4 0.03None
Whole fly59 194 of 4

Looking for FBgn0039769. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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