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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039776 through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr3R:26291773-26311521 (+) // 100.0 //):

Annotation Number : CG31022
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1628705_at
Accessions : protein= EC:1.13.11.- /// EC:1.14.11.2, nucleotide=
Interpro : 0018401 // peptidyl-proline hydroxylation to 4-hydroxy-L-proline // inferred from sequence or structural similarity ///


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain431 ± 134 of 4 2.30Up
Head281 ± 164 of 4 1.50Up
Eye254 ± 114 of 4 1.36None
Thoracicoabdominal ganglion514 ± 74 of 4 2.80Up
Salivary gland40 ± 24 of 4 0.21Down
Crop465 ± 164 of 4 2.50Up
Midgut89 ± 54 of 4 0.50Down
Tubule239 ± 254 of 4 1.30Up
Hindgut384 ± 94 of 4 2.10Up
Heart899 ± 224 of 4 4.82Up
Fat body997 ± 1604 of 4 5.35Up
Ovary159 ± 344 of 4 0.90None
Testis71 ± 24 of 4 0.40Down
Male accessory glands1947 ± 1124 of 410.40Up
Virgin spermatheca3020 ± 584 of 416.19Up
Mated spermatheca2807 ± 924 of 415.05Up
Adult carcass351 ± 144 of 4 1.90Up
Larval CNS389 ± 174 of 4 2.09Up
Larval Salivary gland42 ± 24 of 4 0.23Down
Larval midgut103 ± 44 of 4 0.56None
Larval tubule365 ± 134 of 4 2.00Up
Larval hindgut135 ± 74 of 4 0.73None
Larval fat body388 ± 414 of 4 2.10Up
Larval trachea104 ± 54 of 4 0.56None
Larval carcass528 ± 284 of 4 2.83Up
S2 cells (growing)2212 ± 764 of 411.86Up
Whole fly186 ± 274 of 4

Looking for FBgn0039776. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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