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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: 16/4/2014: We have just migrated to a new server (the old one ran XP!).
Latest news: Please report unexpected behaviours to julian.dow @ glasgow. ac. uk
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This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039787 through 18771 annotations produced 1 hits



(CG9702):

Annotation Number : CG9702
Flybase ID : FBgn0039787
Gbrowse : chr3R:26405153-26407842 (+) // 100.0 //
Probeset : 1634174_at
Accessions : protein= NP_651810;, nucleotide= NM_143553;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // non-traceable author statement /// 0005215 // transporter activity // inferred from e
FlyMine data for FBgn0039787.
Homophila reports that CG9702 is a close match (6e-15) to human gene DFNB4;EVA;PDS;SLC26A4 (NP_000432), a gene associated with Enlarged vestibular aqueduct, 600791 (3);Pendred syndrome, 274600 (3).
VDRC has 2 RNAi stocks for FBgn0039787 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 01 of 4 0.10Down
Head5 00 of 4 0.10Down
Eye9 12 of 4 0.14Down
Thoracicoabdominal ganglion4 10 of 4 0.10Down
Salivary gland34 44 of 4 0.52None
Crop3 00 of 4 0.10Down
Midgut6 00 of 4 0.10Down
Tubule2377 1594 of 435.10Up
Hindgut3 00 of 4 0.10Down
Heart5 01 of 4 0.09Down
Fat body9 52 of 4 0.13Down
Ovary2 10 of 4 0.00Down
Testis6 21 of 4 0.10Down
Male accessory glands2884 804 of 442.60Up
Virgin spermatheca10 32 of 4 0.15Down
Mated spermatheca2 00 of 4 0.04Down
Adult carcass9 20 of 4 0.10Down
Larval CNS5 02 of 4 0.08Down
Larval Salivary gland10 10 of 4 0.15Down
Larval midgut9 20 of 4 0.14Down
Larval tubule1135 474 of 416.80Up
Larval hindgut2101 1034 of 431.07Up
Larval fat body7 10 of 4 0.10Down
Larval trachea5 11 of 4 0.09Down
Larval carcass7 21 of 4 0.12Down
S2 cells (growing)7 02 of 4 0.11Down
Whole fly67 114 of 4

Looking for FBgn0039787. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime