Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039787 through 18771 annotations produced 1 hits



(CG9702):

Annotation Number : CG9702
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039787
Gbrowse : chr3R:26405153-26407842 (+) // 100.0 //
Probeset : 1634174_at
Accessions : protein= NP_651810;, nucleotide= NM_143553;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005215 // transporter activity // non-traceable author statement /// 0005215 // transporter activity // inferred from e
FlyMine data for FBgn0039787.
Homophila reports that CG9702 is a close match (6e-15) to human gene DFNB4;EVA;PDS;SLC26A4 (NP_000432), a gene associated with Enlarged vestibular aqueduct, 600791 (3);Pendred syndrome, 274600 (3).
VDRC has 2 RNAi stocks for FBgn0039787 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 01 of 4 0.10Down
Head5 ± 00 of 4 0.10Down
Eye9 ± 12 of 4 0.14Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.10Down
Salivary gland34 ± 44 of 4 0.52None
Crop3 ± 00 of 4 0.10Down
Midgut6 ± 00 of 4 0.10Down
Tubule2377 ± 1594 of 435.10Up
Hindgut3 ± 00 of 4 0.10Down
Heart5 ± 01 of 4 0.09Down
Fat body9 ± 52 of 4 0.13Down
Ovary2 ± 10 of 4 0.00Down
Testis6 ± 21 of 4 0.10Down
Male accessory glands2884 ± 804 of 442.60Up
Virgin spermatheca10 ± 32 of 4 0.15Down
Mated spermatheca2 ± 00 of 4 0.04Down
Adult carcass9 ± 20 of 4 0.10Down
Larval CNS5 ± 02 of 4 0.08Down
Larval Salivary gland10 ± 10 of 4 0.15Down
Larval midgut9 ± 20 of 4 0.14Down
Larval tubule1135 ± 474 of 416.80Up
Larval hindgut2101 ± 1034 of 431.07Up
Larval fat body7 ± 10 of 4 0.10Down
Larval trachea5 ± 11 of 4 0.09Down
Larval carcass7 ± 21 of 4 0.12Down
S2 cells (growing)7 ± 02 of 4 0.11Down
Whole fly67 ± 114 of 4

Looking for FBgn0039787. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime