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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039788 through 18771 annotations produced 1 hits



chr3R:26407919-26409397 (-) // 100.0 // ():

Annotation Number : CG2241
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1634343_at
Accessions : protein= , nucleotide= NP_651811;
Pathway : 0006508 // proteolysis // inferred from sequence or structural similarity /// 0030163 // protein catabolic process // in
Interpro : "0005737 // cytoplasm // inferred from electronic annotation /// 0005875 // microtubule associated complex // inferred f
FlyMine data for full length.
Homophila reports that CG2241 is a close match (2e-12) to human gene BCS1L;BJS;FLNMS;GRACILE;PTD (NP_004319), a gene associated with Bjornstad syndrome, 262000 (3);GRACILE syndrome, 603358 (3);Leigh syndrome, 256000 (3);Mitochondrial complex III deficiency, 124000 (3).
BioGrid reports that CG2241 interacts with CG3350 CG7773 CG5026 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 13 of 4 0.10Down
Head6 ± 12 of 4 0.10Down
Eye6 ± 11 of 4 0.09Down
Thoracicoabdominal ganglion7 ± 12 of 4 0.10Down
Salivary gland20 ± 53 of 4 0.29Down
Crop10 ± 11 of 4 0.20Down
Midgut11 ± 13 of 4 0.20Down
Tubule19 ± 24 of 4 0.30Down
Hindgut5 ± 11 of 4 0.10Down
Heart7 ± 11 of 4 0.11Down
Fat body8 ± 31 of 4 0.13Down
Ovary5 ± 12 of 4 0.10Down
Testis778 ± 224 of 411.10Up
Male accessory glands15 ± 32 of 4 0.20Down
Virgin spermatheca6 ± 10 of 4 0.09Down
Mated spermatheca4 ± 10 of 4 0.07Down
Adult carcass8 ± 40 of 4 0.10Down
Larval CNS10 ± 14 of 4 0.16Down
Larval Salivary gland8 ± 11 of 4 0.12Down
Larval midgut16 ± 13 of 4 0.23Down
Larval tubule173 ± 204 of 4 2.50Up
Larval hindgut48 ± 54 of 4 0.68Down
Larval fat body103 ± 414 of 4 1.50None
Larval trachea11 ± 42 of 4 0.16Down
Larval carcass24 ± 24 of 4 0.35Down
S2 cells (growing)250 ± 44 of 4 3.57Up
Whole fly70 ± 44 of 4

Looking for FBgn0039788. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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