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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039789 through 18771 annotations produced 1 hits



(CG9717):

Annotation Number : CG9717
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039789
Gbrowse : chr3R:26409605-26413021 (-) // 100.0 //
Probeset : 1626124_at
Accessions : protein= NP_651812;, nucleotide= NM_143555;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0015381 // high affinity sulfate transmembran
FlyMine data for FBgn0039789.
BDGP gene expression has embryonic in situ data for CG9717: 22 pix of staining in 7 body parts.
Homophila reports that CG9717 is a close match (1e-12) to human gene DFNB4;EVA;PDS;SLC26A4 (NP_000432), a gene associated with Enlarged vestibular aqueduct, 600791 (3);Pendred syndrome, 274600 (3).
VDRC has 2 RNAi stocks for FBgn0039789 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head113 ± 54 of 4 3.00Up
Eye251 ± 134 of 4 6.73Up
Thoracicoabdominal ganglion2 ± 10 of 4 0.10Down
Salivary gland229 ± 164 of 4 6.14Up
Crop35 ± 64 of 4 1.00None
Midgut11 ± 11 of 4 0.30Down
Tubule1989 ± 4064 of 453.30Up
Hindgut4 ± 00 of 4 0.10Down
Heart13 ± 13 of 4 0.37Down
Fat body6 ± 21 of 4 0.18Down
Ovary2 ± 00 of 4 0.10Down
Testis3 ± 10 of 4 0.10Down
Male accessory glands0 ± 00 of 4 0.00Down
Virgin spermatheca6 ± 10 of 4 0.17Down
Mated spermatheca10 ± 31 of 4 0.28Down
Adult carcass54 ± 54 of 4 1.50Up
Larval CNS1 ± 10 of 4 0.03Down
Larval Salivary gland4 ± 00 of 4 0.11Down
Larval midgut168 ± 154 of 4 4.50Up
Larval tubule1222 ± 524 of 432.70Up
Larval hindgut15 ± 34 of 4 0.41Down
Larval fat body4 ± 30 of 4 0.10Down
Larval trachea19 ± 63 of 4 0.52Down
Larval carcass36 ± 54 of 4 0.98None
S2 cells (growing)6 ± 01 of 4 0.17Down
Whole fly37 ± 14 of 4

Looking for FBgn0039789. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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