FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039792 through 18771 annotations produced 2 hits

(CG2267):

Annotation Number : CG10305
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004413
Gbrowse : chr2L:18442497-18443237 (-) // 100.0 //
Probeset : 1632220_s_at
Accessions : protein= NP_523595; /// NP_724109; /// NP_724110;, nucleotide= NM_078871; /// NM_165252; /// NM_165253;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005840 // ribosome // inferred from electronic anno
Interpro : 0003735 // structural constituent of ribosome // inferred from electronic annotation /// 0005515 // protein binding // i
FlyMine data for FBgn0004413.
BioGrid reports that CG10305 interacts with CG14164 CG14543 CG6310 CG10510 CG10728 CG11181 CG11228 CG11275 CG11941 CG13287 CG13576 CG15150 CG1528 CG1531 CG15781 CG16747 CG2116 CG2371 CG2851 CG3880 CG14578 CG4038 CG4167 CG4887 CG6240 CG6338 CG6667 CG7285 CG7524 CG8230 CG8487 CG9415 CG9640 CG9902 CG9986 .
VDRC has 2 RNAi stocks for FBgn0004413 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3274 ± 91	4 of 4	0.80	None
Head	5001 ± 266	4 of 4	1.20	None
Eye	5847 ± 78	4 of 4	1.39	Up
Thoracicoabdominal ganglion	4007 ± 112	4 of 4	1.00	None
Salivary gland	13497 ± 514	4 of 4	3.21	Up
Crop	6089 ± 306	4 of 4	1.40	Up
Midgut	5529 ± 57	4 of 4	1.30	Up
Tubule	5346 ± 94	4 of 4	1.30	Up
Hindgut	4969 ± 124	4 of 4	1.20	None
Heart	6014 ± 381	4 of 4	1.43	Up
Fat body	5736 ± 710	4 of 4	1.36	Up
Ovary	3724 ± 60	4 of 4	0.90	None
Testis	1367 ± 40	4 of 4	0.30	Down
Male accessory glands	8110 ± 167	4 of 4	1.90	Up
Virgin spermatheca	5522 ± 173	4 of 4	1.31	Up
Mated spermatheca	5547 ± 151	4 of 4	1.32	Up
Adult carcass	5321 ± 300	4 of 4	1.30	Up
Larval CNS	2804 ± 214	4 of 4	0.67	Down
Larval Salivary gland	7783 ± 253	4 of 4	1.85	Up
Larval midgut	5937 ± 223	4 of 4	1.41	Up
Larval tubule	5184 ± 70	4 of 4	1.20	None
Larval hindgut	4482 ± 72	4 of 4	1.06	None
Larval fat body	9572 ± 1134	4 of 4	2.30	Up
Larval trachea	5373 ± 239	4 of 4	1.28	Up
Larval carcass	4708 ± 363	4 of 4	1.12	None
S2 cells (growing)	4388 ± 49	4 of 4	1.04	None
Whole fly	4210 ± 314	4 of 4

(CG2267):

Annotation Number : CG2267
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039792
Gbrowse : chr3R:26452961-26454750 (-) // 100.0 //
Probeset : 1630896_at
Accessions : protein= NP_651815;, nucleotide= NM_143558;
FlyMine data for FBgn0039792.
BDGP gene expression has embryonic in situ data for CG2267: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0039792 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 0	0 of 4	0.00	Down
Head	4 ± 1	0 of 4	0.00	Down
Eye	2 ± 0	0 of 4	0.01	Down
Thoracicoabdominal ganglion	6 ± 2	1 of 4	0.00	Down
Salivary gland	9 ± 3	0 of 4	0.03	Down
Crop	7 ± 2	0 of 4	0.00	Down
Midgut	12 ± 2	2 of 4	0.00	Down
Tubule	7 ± 1	1 of 4	0.00	Down
Hindgut	8 ± 2	1 of 4	0.00	Down
Heart	3 ± 1	2 of 4	0.01	Down
Fat body	6 ± 3	1 of 4	0.02	Down
Ovary	3 ± 1	0 of 4	0.00	Down
Testis	2729 ± 125	4 of 4	8.50	Up
Male accessory glands	11 ± 1	1 of 4	0.00	Down
Virgin spermatheca	7 ± 0	1 of 4	0.02	Down
Mated spermatheca	11 ± 2	2 of 4	0.03	Down
Adult carcass	26 ± 5	4 of 4	0.10	Down
Larval CNS	4 ± 2	0 of 4	0.01	Down
Larval Salivary gland	4 ± 1	0 of 4	0.01	Down
Larval midgut	15 ± 1	4 of 4	0.05	Down
Larval tubule	10 ± 1	0 of 4	0.00	Down
Larval hindgut	9 ± 1	2 of 4	0.03	Down
Larval fat body	439 ± 223	4 of 4	1.40	None
Larval trachea	14 ± 19	1 of 4	0.05	Down
Larval carcass	11 ± 1	0 of 4	0.04	Down
S2 cells (growing)	6 ± 1	0 of 4	0.02	Down
Whole fly	322 ± 26	4 of 4

Looking for FBgn0039792. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720