FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0039797 through 18771 annotations produced 1 hits

(CG1340):

Annotation Number : CG1340
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039797
Gbrowse : chr3R:26551808-26553739 (+) // 100.0 //
Probeset : 1637664_at
Accessions : protein= NP_651820;, nucleotide= NM_143563;
Pathway : 0005829 // cytosol // inferred from sequence or structural similarity
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0039797.
BDGP gene expression has embryonic in situ data for CG1340: 4 pix of staining in 1 body parts.
BioGrid reports that CG1340 interacts with CG4394 .
VDRC has 3 RNAi stocks for FBgn0039797 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 0	0 of 4	0.10	Down
Head	6 ± 1	1 of 4	0.10	Down
Eye	4 ± 1	2 of 4	0.04	Down
Thoracicoabdominal ganglion	4 ± 1	1 of 4	0.00	Down
Salivary gland	22 ± 3	3 of 4	0.20	Down
Crop	5 ± 0	1 of 4	0.00	Down
Midgut	7 ± 0	1 of 4	0.10	Down
Tubule	7 ± 0	0 of 4	0.10	Down
Hindgut	5 ± 0	1 of 4	0.00	Down
Heart	5 ± 1	2 of 4	0.05	Down
Fat body	7 ± 1	3 of 4	0.07	Down
Ovary	3 ± 0	0 of 4	0.00	Down
Testis	1253 ± 30	4 of 4	11.40	Up
Male accessory glands	5 ± 1	0 of 4	0.00	Down
Virgin spermatheca	4 ± 1	0 of 4	0.04	Down
Mated spermatheca	6 ± 0	3 of 4	0.06	Down
Adult carcass	7 ± 2	1 of 4	0.10	Down
Larval CNS	5 ± 1	1 of 4	0.05	Down
Larval Salivary gland	7 ± 2	1 of 4	0.07	Down
Larval midgut	11 ± 1	2 of 4	0.10	Down
Larval tubule	7 ± 2	1 of 4	0.10	Down
Larval hindgut	5 ± 1	1 of 4	0.05	Down
Larval fat body	140 ± 60	4 of 4	1.30	None
Larval trachea	9 ± 6	2 of 4	0.08	Down
Larval carcass	9 ± 1	1 of 4	0.09	Down
S2 cells (growing)	57 ± 2	4 of 4	0.53	Down
Whole fly	109 ± 8	4 of 4

Looking for FBgn0039797. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720