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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039800 through 18771 annotations produced 1 hits



CG11314 (Npc2g):

Annotation Number : CG11314
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039800
Gbrowse : chr3R:26570325-26570983 (-) // 100.0 //
Probeset : 1627595_at
Accessions : protein= NP_651823;, nucleotide= NM_143566;
FlyMine data for FBgn0039800.
BDGP gene expression has embryonic in situ data for CG11314: 22 pix of staining in 4 body parts.
BioGrid reports that CG11314 interacts with CG13138 CG15016 CG15067 CG4697 CG9632 .
VDRC has 5 RNAi stocks for FBgn0039800 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 ± 64 of 4 0.10Down
Head2108 ± 854 of 4 3.10Up
Eye1515 ± 2044 of 4 2.24Up
Thoracicoabdominal ganglion70 ± 104 of 4 0.10Down
Salivary gland27 ± 70 of 4 0.04Down
Crop76 ± 124 of 4 0.10Down
Midgut15 ± 40 of 4 0.00Down
Tubule27 ± 42 of 4 0.00Down
Hindgut253 ± 104 of 4 0.40Down
Heart4491 ± 3594 of 4 6.65Up
Fat body4695 ± 5534 of 4 6.95Up
Ovary3 ± 00 of 4 0.00Down
Testis7 ± 11 of 4 0.00Down
Male accessory glands16 ± 20 of 4 0.00Down
Virgin spermatheca1253 ± 1214 of 4 1.86Up
Mated spermatheca1557 ± 1324 of 4 2.31Up
Adult carcass2886 ± 2274 of 4 4.30Up
Larval CNS4 ± 30 of 4 0.01Down
Larval Salivary gland157 ± 94 of 4 0.23Down
Larval midgut26 ± 42 of 4 0.04Down
Larval tubule27 ± 62 of 4 0.00Down
Larval hindgut194 ± 304 of 4 0.29Down
Larval fat body5167 ± 8334 of 4 7.60Up
Larval trachea123 ± 904 of 4 0.18Down
Larval carcass69 ± 133 of 4 0.10Down
S2 cells (growing)69 ± 52 of 4 0.10Down
Whole fly675 ± 464 of 4

Looking for FBgn0039800. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime