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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039801 through 18771 annotations produced 1 hits

CG11315 (Npc2h):

Annotation Number : CG11315
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039801
Gbrowse : chr3R:26571200-26572010 (-) // 100.0 //
Probeset : 1624409_a_at
Accessions : protein= NP_651824; /// NP_733400;, nucleotide= NM_143567; /// NM_170521;
FlyMine data for FBgn0039801.
BDGP gene expression has embryonic in situ data for CG11315: 25 pix of staining in 5 body parts.
VDRC has 5 RNAi stocks for FBgn0039801 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 14 of 4 0.10Down
Head722 344 of 4 3.30Up
Eye276 324 of 4 1.28None
Thoracicoabdominal ganglion28 34 of 4 0.10Down
Salivary gland18 42 of 4 0.08Down
Crop31 64 of 4 0.10Down
Midgut9 00 of 4 0.00Down
Tubule20 23 of 4 0.10Down
Hindgut66 44 of 4 0.30Down
Heart909 464 of 4 4.20Up
Fat body1580 1944 of 4 7.30Up
Ovary2 00 of 4 0.00Down
Testis113 44 of 4 0.50Down
Male accessory glands5 20 of 4 0.00Down
Virgin spermatheca842 344 of 4 3.89Up
Mated spermatheca1118 884 of 4 5.17Up
Adult carcass1346 624 of 4 6.20Up
Larval CNS2 10 of 4 0.01Down
Larval Salivary gland23 34 of 4 0.11Down
Larval midgut9 10 of 4 0.04Down
Larval tubule4 20 of 4 0.00Down
Larval hindgut15 34 of 4 0.07Down
Larval fat body295 184 of 4 1.40Up
Larval trachea13 62 of 4 0.06Down
Larval carcass6 00 of 4 0.03Down
S2 cells (growing)21 14 of 4 0.10Down
Whole fly216 204 of 4

Looking for FBgn0039801. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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