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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039806 through 18771 annotations produced 1 hits



(CG15545):

Annotation Number : CG15545
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039806
Gbrowse : chr3R:26696779-26698002 (-) // 100.0 //
Probeset : 1638760_at
Accessions : protein= NP_651830;, nucleotide= NM_143573;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039806.
BioGrid reports that CG15545 interacts with CG15631 CG17348 CG3661 CG5935 CG6323 CG5829 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain6 10 of 4 0.70None
Head8 10 of 4 1.00None
Eye4 21 of 4 0.52None
Thoracicoabdominal ganglion7 20 of 4 0.90None
Salivary gland54 54 of 4 6.16Up
Crop14 30 of 4 1.60None
Midgut3 10 of 4 0.40None
Tubule2 00 of 4 0.30Down
Hindgut8 30 of 4 1.00None
Heart2 00 of 4 0.27Down
Fat body7 40 of 4 0.79None
Ovary4 10 of 4 0.50None
Testis6 10 of 4 0.70None
Male accessory glands13 20 of 4 1.50None
Virgin spermatheca11 30 of 4 1.24None
Mated spermatheca9 20 of 4 1.06None
Adult carcass22 60 of 4 2.50None
Larval CNS5 20 of 4 0.67None
Larval Salivary gland10 00 of 4 1.23None
Larval midgut3 00 of 4 0.44None
Larval tubule3 00 of 4 0.40None
Larval hindgut7 20 of 4 0.84None
Larval fat body1 00 of 4 0.20Down
Larval trachea10 71 of 4 1.19None
Larval carcass17 30 of 4 1.95None
S2 cells (growing)4 10 of 4 0.51None
Whole fly8 20 of 4

Looking for FBgn0039806. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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