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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039807 through 18771 annotations produced 1 hits


Annotation Number : CG15546
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039807
Gbrowse : chr3R:26700623-26701856 (-) // 100.0 //
Probeset : 1634877_at
Accessions : protein= NP_651831;, nucleotide= NM_143574;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0039807.
BioGrid reports that CG15546 interacts with CG1894 CG4394 CG5203 CG6486 .
VDRC has 1 RNAi stocks for FBgn0039807 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.10Down
Head39 44 of 4 1.70Up
Eye18 14 of 4 0.78Down
Thoracicoabdominal ganglion1 00 of 4 0.10Down
Salivary gland472 84 of 420.23Up
Crop31 43 of 4 1.30None
Midgut2 00 of 4 0.10Down
Tubule1 00 of 4 0.10Down
Hindgut66 54 of 4 2.80Up
Heart8 21 of 4 0.36Down
Fat body8 60 of 4 0.35Down
Ovary4 10 of 4 0.20Down
Testis4 00 of 4 0.20Down
Male accessory glands2 10 of 4 0.10Down
Virgin spermatheca6 20 of 4 0.26Down
Mated spermatheca9 21 of 4 0.42Down
Adult carcass107 54 of 4 4.60Up
Larval CNS1 00 of 4 0.07Down
Larval Salivary gland56 34 of 4 2.41Up
Larval midgut6 20 of 4 0.29Down
Larval tubule2 00 of 4 0.10Down
Larval hindgut9 20 of 4 0.39Down
Larval fat body4 10 of 4 0.20Down
Larval trachea10 60 of 4 0.47Down
Larval carcass73 94 of 4 3.16Up
S2 cells (growing)2 00 of 4 0.09Down
Whole fly23 03 of 4

Looking for FBgn0039807. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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