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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039809 through 18771 annotations produced 1 hits



(CG15547):

Annotation Number : CG15547
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039809
Gbrowse : chr3R:26707837-26709225 (-) // 100.0 //
Probeset : 1630765_at
Accessions : protein= NP_651833;, nucleotide= NM_143576;
Interpro : 0004550 // nucleoside diphosphate kinase activity // inferred from electronic annotation /// 0005524 // ATP binding // i
FlyMine data for FBgn0039809.
VDRC has 2 RNAi stocks for FBgn0039809 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 ± 44 of 4 1.10None
Head13 ± 14 of 4 0.50Down
Eye13 ± 13 of 4 0.50Down
Thoracicoabdominal ganglion19 ± 14 of 4 0.70Down
Salivary gland23 ± 51 of 4 0.87None
Crop10 ± 20 of 4 0.40Down
Midgut21 ± 13 of 4 0.80None
Tubule13 ± 12 of 4 0.50Down
Hindgut17 ± 13 of 4 0.70Down
Heart17 ± 14 of 4 0.64Down
Fat body26 ± 34 of 4 0.99None
Ovary7 ± 01 of 4 0.30Down
Testis242 ± 124 of 4 8.90Up
Male accessory glands10 ± 20 of 4 0.40Down
Virgin spermatheca20 ± 24 of 4 0.74None
Mated spermatheca9 ± 13 of 4 0.36Down
Adult carcass14 ± 20 of 4 0.50Down
Larval CNS15 ± 14 of 4 0.59Down
Larval Salivary gland13 ± 11 of 4 0.51Down
Larval midgut28 ± 81 of 4 1.05None
Larval tubule40 ± 24 of 4 1.50Up
Larval hindgut17 ± 14 of 4 0.64Down
Larval fat body46 ± 223 of 4 1.70None
Larval trachea7 ± 10 of 4 0.27Down
Larval carcass15 ± 40 of 4 0.58None
S2 cells (growing)27 ± 14 of 4 1.02None
Whole fly27 ± 24 of 4

Looking for FBgn0039809. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime