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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039810 through 18771 annotations produced 1 hits



(CG15549):

Annotation Number : CG15549
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039810
Gbrowse : chr3R:26761117-26762229 (-) // 100.0 //
Probeset : 1623974_at
Accessions : protein= NP_651834;, nucleotide= NM_143577;
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0008083 // growth factor activity // inferred from
FlyMine data for FBgn0039810.
BDGP gene expression has embryonic in situ data for CG15549: 6 pix of staining in 1 body parts.
BioGrid reports that CG15549 interacts with CG8383 .
VDRC has 1 RNAi stocks for FBgn0039810 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head4 ± 10 of 4 0.30Down
Eye5 ± 10 of 4 0.32Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland6 ± 30 of 4 0.38None
Crop3 ± 10 of 4 0.20Down
Midgut1 ± 00 of 4 0.10Down
Tubule2 ± 00 of 4 0.10Down
Hindgut2 ± 00 of 4 0.20Down
Heart0 ± 00 of 4 0.06Down
Fat body3 ± 20 of 4 0.18Down
Ovary2 ± 10 of 4 0.20Down
Testis274 ± 84 of 417.20Up
Male accessory glands7 ± 20 of 4 0.50Down
Virgin spermatheca3 ± 10 of 4 0.20Down
Mated spermatheca6 ± 10 of 4 0.41Down
Adult carcass7 ± 10 of 4 0.50Down
Larval CNS4 ± 20 of 4 0.26Down
Larval Salivary gland3 ± 10 of 4 0.22Down
Larval midgut4 ± 10 of 4 0.26Down
Larval tubule2 ± 10 of 4 0.20Down
Larval hindgut4 ± 10 of 4 0.26Down
Larval fat body23 ± 82 of 4 1.50None
Larval trachea3 ± 20 of 4 0.23Down
Larval carcass4 ± 10 of 4 0.25Down
S2 cells (growing)2 ± 10 of 4 0.16Down
Whole fly16 ± 14 of 4

Looking for FBgn0039810. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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