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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0039816 through 18771 annotations produced 1 hits


Annotation Number : CG11317
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039816
Gbrowse : chr3R:26916428-26923040 (-) // 100.0 //
Probeset : 1636385_at
Accessions : protein= NP_651840;, nucleotide= NM_143583;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0008270 // zinc ion binding // inferred from electronic annotation
FlyMine data for FBgn0039816.
BDGP gene expression has embryonic in situ data for CG11317: 9 pix of staining in 2 body parts.
TRiP has 1 RNAi stocks for FBgn0039816 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain371 74 of 443.50Up
Head76 54 of 4 8.90Up
Eye12 14 of 4 1.44None
Thoracicoabdominal ganglion173 64 of 420.30Up
Salivary gland12 40 of 4 1.46None
Crop3 10 of 4 0.40None
Midgut1 00 of 4 0.10Down
Tubule2 00 of 4 0.30Down
Hindgut1 00 of 4 0.20Down
Heart2 10 of 4 0.30Down
Fat body4 30 of 4 0.48None
Ovary1 00 of 4 0.20Down
Testis2 01 of 4 0.30Down
Male accessory glands2 00 of 4 0.30Down
Virgin spermatheca13 22 of 4 1.61None
Mated spermatheca13 42 of 4 1.63None
Adult carcass4 10 of 4 0.50None
Larval CNS171 144 of 420.14Up
Larval Salivary gland3 10 of 4 0.36Down
Larval midgut1 00 of 4 0.14Down
Larval tubule3 10 of 4 0.40None
Larval hindgut1 00 of 4 0.15Down
Larval fat body2 10 of 4 0.30Down
Larval trachea3 20 of 4 0.44None
Larval carcass1 00 of 4 0.17Down
S2 cells (growing)1 00 of 4 0.16Down
Whole fly8 10 of 4

Looking for FBgn0039816. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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