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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039828 through 18771 annotations produced 1 hits



(CG1542):

Annotation Number : CG1542
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039828
Gbrowse : chr3R:27039131-27040510 (+) // 100.0 //
Probeset : 1638007_at
Accessions : protein= NP_651850;, nucleotide= NM_143593;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005730 // nucleolus // inferred from sequence or structur
FlyMine data for FBgn0039828.
BDGP gene expression has embryonic in situ data for CG1542: 10 pix of staining in 17 body parts.
BioGrid reports that CG1542 interacts with CG9511 .
VDRC has 3 RNAi stocks for FBgn0039828 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain57 24 of 4 0.30Down
Head67 24 of 4 0.40Down
Eye65 24 of 4 0.40Down
Thoracicoabdominal ganglion66 14 of 4 0.40Down
Salivary gland81 74 of 4 0.50Down
Crop83 54 of 4 0.50Down
Midgut80 54 of 4 0.50Down
Tubule74 94 of 4 0.50Down
Hindgut58 34 of 4 0.40Down
Heart68 54 of 4 0.42Down
Fat body97 134 of 4 0.59Down
Ovary337 54 of 4 2.10Up
Testis146 54 of 4 0.90Down
Male accessory glands159 74 of 4 1.00None
Virgin spermatheca80 14 of 4 0.49Down
Mated spermatheca129 44 of 4 0.79Down
Adult carcass73 74 of 4 0.40Down
Larval CNS198 54 of 4 1.22Up
Larval Salivary gland138 74 of 4 0.85Down
Larval midgut49 74 of 4 0.30Down
Larval tubule38 24 of 4 0.20Down
Larval hindgut84 114 of 4 0.52Down
Larval fat body59 24 of 4 0.40Down
Larval trachea157 294 of 4 0.96None
Larval carcass96 234 of 4 0.59None
S2 cells (growing)186 44 of 4 1.14Up
Whole fly163 44 of 4

Looking for FBgn0039828. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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