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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039830 through 18771 annotations produced 1 hits



chr3R:27041863-27045357 (-) // 100.0 // (F0/F1 ATP synthase Lipid-binding protein):

Annotation Number : CG1746
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1629342_s_at
Accessions : protein= , nucleotide= NP_651852; /// NP_733422; /// NP_733423;
Pathway : 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic ann
Interpro : "0000276 // mitochondrial proton-transporting ATP synthase complex
FlyMine data for full length.
BioGrid reports that CG1746 interacts with CG18217 CG32264 CG4887 CG4998 CG7196 CG9319 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3092 354 of 4 1.00None
Head3417 1194 of 4 1.10None
Eye4618 754 of 4 1.54Up
Thoracicoabdominal ganglion4240 974 of 4 1.40Up
Salivary gland5765 1854 of 4 1.93Up
Crop3541 1824 of 4 1.20None
Midgut2549 324 of 4 0.90None
Tubule3767 894 of 4 1.30Up
Hindgut3867 1004 of 4 1.30Up
Heart4270 1294 of 4 1.43Up
Fat body4303 4294 of 4 1.44Up
Ovary2450 324 of 4 0.80Down
Testis454 154 of 4 0.20Down
Male accessory glands1445 374 of 4 0.50Down
Virgin spermatheca3779 1714 of 4 1.26Up
Mated spermatheca3560 1834 of 4 1.19None
Adult carcass5588 4754 of 4 1.90Up
Larval CNS2511 1104 of 4 0.84Down
Larval Salivary gland3423 1154 of 4 1.14None
Larval midgut2396 854 of 4 0.80Down
Larval tubule2168 2404 of 4 0.70Down
Larval hindgut3516 184 of 4 1.17Up
Larval fat body1378 1564 of 4 0.50Down
Larval trachea2159 484 of 4 0.72Down
Larval carcass4099 4694 of 4 1.37None
S2 cells (growing)1399 194 of 4 0.47Down
Whole fly2993 1584 of 4

Looking for FBgn0039830. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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