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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039831 through 18771 annotations produced 2 hits



(CG12054):

Annotation Number : S.C3R003628
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039831
Gbrowse : chr3R:27054418-27054846 (+) // 100.0 //
Probeset : 1637162_at
Accessions : protein= NP_651853; /// NP_733424;, nucleotide= NM_143596; /// NM_170545;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0039831.
BDGP gene expression has embryonic in situ data for CG12054: 13 pix of staining in 6 body parts.
VDRC has 3 RNAi stocks for FBgn0039831 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain268 104 of 4 4.10Up
Head77 84 of 4 1.20None
Eye76 74 of 4 1.16None
Thoracicoabdominal ganglion230 104 of 4 3.50Up
Salivary gland125 104 of 4 1.90Up
Crop103 44 of 4 1.60Up
Midgut52 44 of 4 0.80None
Tubule72 44 of 4 1.10None
Hindgut130 34 of 4 2.00Up
Heart77 64 of 4 1.17None
Fat body74 104 of 4 1.12None
Ovary96 44 of 4 1.50Up
Testis31 24 of 4 0.50Down
Male accessory glands92 54 of 4 1.40Up
Virgin spermatheca52 44 of 4 0.79None
Mated spermatheca46 24 of 4 0.71Down
Adult carcass71 44 of 4 1.10None
Larval CNS139 194 of 4 2.12Up
Larval Salivary gland108 84 of 4 1.65Up
Larval midgut43 34 of 4 0.67Down
Larval tubule159 74 of 4 2.40Up
Larval hindgut82 14 of 4 1.26None
Larval fat body67 74 of 4 1.00None
Larval trachea85 114 of 4 1.29None
Larval carcass100 74 of 4 1.53Up
S2 cells (growing)182 94 of 4 2.77Up
Whole fly65 54 of 4



(CG12054):

Annotation Number : CG12054
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039831
Gbrowse : chr3R:27046425-27054213 (+) // 100.0 //
Probeset : 1628688_at
Accessions : protein= NP_651853; /// NP_733424;, nucleotide= NM_143596; /// NM_170545;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0039831.
BDGP gene expression has embryonic in situ data for CG12054: 13 pix of staining in 6 body parts.
BioGrid reports that CG12054 interacts with CG12404 .
VDRC has 3 RNAi stocks for FBgn0039831 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain371 104 of 4 2.20Up
Head92 54 of 4 0.50Down
Eye159 124 of 4 0.95None
Thoracicoabdominal ganglion319 134 of 4 1.90Up
Salivary gland68 94 of 4 0.41Down
Crop110 14 of 4 0.70Down
Midgut80 64 of 4 0.50Down
Tubule83 54 of 4 0.50Down
Hindgut104 54 of 4 0.60Down
Heart104 34 of 4 0.62Down
Fat body100 144 of 4 0.60Down
Ovary484 54 of 4 2.90Up
Testis25 04 of 4 0.10Down
Male accessory glands53 24 of 4 0.30Down
Virgin spermatheca89 34 of 4 0.53Down
Mated spermatheca79 74 of 4 0.47Down
Adult carcass58 74 of 4 0.30Down
Larval CNS319 104 of 4 1.90Up
Larval Salivary gland124 84 of 4 0.74Down
Larval midgut80 54 of 4 0.48Down
Larval tubule206 204 of 4 1.20None
Larval hindgut81 34 of 4 0.48Down
Larval fat body50 24 of 4 0.30Down
Larval trachea99 104 of 4 0.59Down
Larval carcass125 34 of 4 0.75Down
S2 cells (growing)86 14 of 4 0.52Down
Whole fly168 124 of 4

Looking for FBgn0039831. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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