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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0039832 through 18771 annotations produced 1 hits



(CG15563):

Annotation Number : CG15563
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039832
Gbrowse : chr3R:27057665-27058016 (-) // 100.0 //
Probeset : 1631625_at
Accessions : protein= NP_651854;, nucleotide= NM_143597;
FlyMine data for FBgn0039832.
VDRC has 3 RNAi stocks for FBgn0039832 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.60None
Head4 ± 10 of 4 1.70None
Eye1 ± 00 of 4 0.70None
Thoracicoabdominal ganglion2 ± 10 of 4 1.00None
Salivary gland5 ± 20 of 4 2.15None
Crop3 ± 10 of 4 1.50None
Midgut5 ± 30 of 4 2.10None
Tubule3 ± 00 of 4 1.20None
Hindgut3 ± 10 of 4 1.50None
Heart2 ± 00 of 4 0.95None
Fat body6 ± 40 of 4 2.58None
Ovary2 ± 01 of 4 1.00None
Testis12 ± 24 of 4 5.00Up
Male accessory glands2 ± 00 of 4 0.80None
Virgin spermatheca4 ± 00 of 4 1.67None
Mated spermatheca5 ± 10 of 4 2.13None
Adult carcass7 ± 50 of 4 3.20None
Larval CNS3 ± 10 of 4 1.27None
Larval Salivary gland5 ± 10 of 4 2.10None
Larval midgut4 ± 00 of 4 1.78None
Larval tubule1 ± 00 of 4 0.40None
Larval hindgut2 ± 00 of 4 0.98None
Larval fat body7 ± 20 of 4 3.10None
Larval trachea2 ± 20 of 4 1.06None
Larval carcass7 ± 21 of 4 3.19None
S2 cells (growing)1 ± 00 of 4 0.53None
Whole fly2 ± 00 of 4

Looking for FBgn0039832. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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